Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq8712 150 4e-31 seq108458 105 1e-17 >seq8712 Length=1748 Score = 150 bits (166), Expect = 4e-31 Identities = 436/663 (66%), Gaps = 30/663 (5%) Strand=Plus/Minus Query 248757 CGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGGA 248816 |||||| || |||| | | | ||| ||| || |||| ||||| || ||| || | Sbjct 821 CGTCATGAAGCACAAGGAGGAACTC---GACTCTGCCATTGTCTACGACAGAGACTTCAA 765 Query 248817 GTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAA 248876 ||| | | ||||| ||||| || |||||| ||| ||||||||||| | | ||||| Sbjct 764 CTACCAGTACTTTGGCTTCAAGACTCTGGAGCGATCCTATCTCCTCAAGCTCAACGGCAA 705 Query 248877 GATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGA 248936 ||| || || ||| ||||||||| | ||||| || || ||||| || | || || Sbjct 704 GATTGTCGAGCGACCACAGCACATGATTATGCGTGTTGCCGTCGGTAT---CTGGGGAGA 648 Query 248937 CA---TAGAGAGCGTGCTCGAGACGTACACCGGAATG---AGTGAACGCTGGATGACACA 248990 || | ||| | || || || || |||| | ||| || || || | || || Sbjct 647 CAACCTGGAGCGTGTCCTGGAAACCTACAACCTCATGTCGAGCAAATTCT---TCACCCA 591 Query 248991 TGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAAT--CAGCTGAGCTCGTGCTTT 249048 ||| | || || || |||||||| ||||| | ||||| |||||| || ||||| Sbjct 590 CGCCTCGCCCACACTATTCAACGCTGGTACG--CCACAATGCCAGCTGTCATCCTGCTTC 533 Query 249049 CTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG--- 249105 ||| | | | || | || ||| |||| ||||| |||||||| || |||||| Sbjct 532 CTTGTCGAC-TGAAGGATGACAGCATCGAAGGCATCTATGACACCCT----CAGACGTGC 478 Query 249106 GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAG 249165 || | ||| || || | || ||||| ||||| || |||| | ||| || || | Sbjct 477 GCCATGATCTCCAAGATGGCTGGCGGCATCGGCCTGAACGTCCACCGCATTCGTGCCACT 418 Query 249166 GGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGC 249225 || |||||||| || || || || | | || |||| ||| | ||||| Sbjct 417 GGCTCGTACATTGCCGGCACCAACGGCACCTCAAACGGCGTCGTTCCCATGCTTCGCGTG 358 Query 249226 TTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCC 249282 || | ||||||||| | | || |||||| || | ||| || | || || Sbjct 357 TTCAACAACACCGCCAGATACGTCGACCAGGGTGGCAACAAGCGACCTGGTGCTTTGCCC 298 Query 249283 ATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAAC 249342 || || |||| ||||||||| || | || |||||||| ||| || ||||||| || Sbjct 297 ATTTACCTGGAGCCGTGGCACGCAGACGTGTTTGAGTTCCTCGACCTGCGAAAGAACCAC 238 Query 249343 GGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTC 249402 ||||| ||| | | || |||||||||||| | || ||| | |||| |||||| Sbjct 237 GGCAAGGAGGAAGTTCGTGCCCGTGACCTCTTCCTTGCTCTATGGATTCCCGATTTGTTC 178 Query 249403 ATG 249405 ||| Sbjct 177 ATG 175 >seq108458 Length=422 Score = 105 bits (116), Expect = 1e-17 Identities = 141/194 (73%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 254195 ACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGA 254254 ||||| || ||||| || || |||| | || |||||||| |||| ||||||| || Sbjct 65 ACCCG--TGCCCGCCGTTTAAA-TCGTCGTGCTTGACGAGGCCGACAGCATGACGCAGGA 121 Query 254255 CGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCT 254314 ||| ||||| ||||| ||||| || ||||| || || | ||||||| || ||||| Sbjct 122 CGCTCAGTCGGCCCTGCGCCGCACCATGGAAACCTACAGCCGCATGACGCGCTTCTGCCT 181 Query 254315 GGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCG 254374 |||||||||||||| || ||||||| |||||| || || ||| ||| || || Sbjct 182 CGTGTGCAACTACGTCACGCGCATCATCGACCCGCTCGCAAGCCGCTGCAGCAAATTCCG 241 Query 254375 ATTCAGCACCCTCG 254388 |||| | ||||| Sbjct 242 CTTCAAGAGCCTCG 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071973780550400