Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_002730.1 Length=38297 Score E Sequences producing significant alignments: (Bits) Value seq47236 212 2e-50 seq53235 159 8e-35 seq61012 150 4e-32 seq38457 145 2e-30 seq34527 136 1e-27 seq48546 86.0 2e-12 seq56092 80.6 7e-11 >seq47236 Length=1665 Score = 212 bits (234), Expect = 2e-50 Identities = 256/347 (74%), Gaps = 20/347 (6%) Strand=Plus/Minus Query 17392 ATTACCGTGATAACGCCATTACCTACAAAGAGCAGCGCGACAAAAACACCAGAGAACTGA 17451 |||| || | || |||||| | ||| |||||| || || | | | ||||||| Sbjct 770 ATTATCGCGGCAATGCCATTGATTTTAAATCGCAGCGGGATAAGGCCTCTGGCGAACTGA 711 Query 17452 AGCTGGCGAACGCCACCATTACTGACATGCAACAGCGCCAGCTTGATGCTGATGCACTCG 17511 || |||| |||||||| |||| ||||||||| || |||| || | || ||| |||| Sbjct 710 AGTTGGCAAACGCCACGATTAATGACATGCAGGTACGTCAGCGAGACGTTGCTGCCCTCG 651 Query 17512 ATGCTAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTTCGGCGC- 17570 |||| ||||| || |||||||||||||||||||| |||||||||| ||||| ||| Sbjct 650 ATGCGAAATATACCAAGGAGTTAGCTGATGCGAACACTGAAAATGACAGGCTTCG-CGCT 592 Query 17571 AAGCTTGATAATGGTGGCCGGGTGCTCGTCAAAGGAAAATGCCCTGTGCCAGCCTCAGCC 17630 ||||| | | |||||||||||||| |||| ||| |||| | | || Sbjct 591 AAGCTGGCTGCTGGTGGCCGGGTGCGGGTCACAGGCGAATG-------------TAAACC 545 Query 17631 AAAACCTCCAGCGCCTCCGGCA---TGGGCAATGATGCCACCGTCGAACTCTCTCCAGTT 17687 || |||| | ||||||||| ||||||||| | ||||||||||||||||||||| Sbjct 544 GGAA--TCCACCACCTCCGGCAGCGTGGGCAATGCAGGAACCGTCGAACTCTCTCCAGTT 487 Query 17688 GCTGGACGAAACGTTCTCGGTATCCGGGACGGAATTATCCGCGACCA 17734 |||||| |||||||||| ||||||| | |||||| ||| ||||||| Sbjct 486 GCTGGATCAAACGTTCTCAGTATCCGAGCCGGAATCATCAGCGACCA 440 >seq53235 Length=843 Score = 159 bits (176), Expect = 8e-35 Identities = 541/830 (65%), Gaps = 31/830 (4%) Strand=Plus/Minus Query 27128 ACGATTGAATATTTCTCCCTGACGGGGGCAACCACCGTTG---GTGCTGCTTTGTATGTC 27184 |||||||| |||| ||| || || ||| || ||| || || ||| || | || || Sbjct 843 ACGATTGAGTATT-CTCTCTCACAGGGTCATCCAGCGCTGTAGGTGTGGCAGT-TACGTA 786 Query 27185 GCACAGCCATCGC-TGATGGTGCAGAAAGGCATTGCCGGGACTTACTGCAAAACGCCGTT 27243 | ||||| || ||||||| ||||| || ||||| || || | ||| || || || Sbjct 785 TCCCAGCCGTCAAGTGATGGTCCAGAAGGGGATTGCAGGAACATTCTGTAAGACAAAGTA 726 Query 27244 TGCTGATTCGTATGCGTTCATCAGCAATCCGGCAACAGGTGCGCCGTCTGTATATATCAT 27303 |||||||| | || | |||||| |||| || || || ||||| || || || ||||| Sbjct 725 CGCTGATTCTCACGCCATAATCAGCCATCCAGCCACCGGAGCGCCATCAGTTTACATCAT 666 Query 27304 CGGCTCCGGTCAGGTGTCAC-CAATCTCCAGCGCGAGCATTGAGAAAATCCTCCGCTCCT 27362 | ||||| || ||| | ||| ||| | | | ||| || || || | | | Sbjct 665 CAATTCCGGCTCGGC-TCAGGCTATCGCCACCTCAACCATCGAAAAGATAATTCAGGGAT 607 Query 27363 ACACCGCTGATGAACTGGCTGATGGCGTGATGGAATCGTTGCGCTTTGATGCTCATGAGT 27422 | | | |||| | | || | | ||||| ||| |||| ||||| ||||||| | Sbjct 606 ATTCTGAGTTTGAATTATCAACTGCCTTTATGGAGTCGGTGCGGTTTGAATCTCATGAAT 547 Query 27423 TGCTGATTATCCACCTGCCGCGCCACGTCCTAGTATAT--GACGCATCTTCA-AGCGCCA 27479 | |||||||| ||||| || ||||| || ||||| | |||| |||| || || Sbjct 546 TACTGATTATTCACCTTCCTAAGCACGTTCTGGTATAGACGGCGCAGCTTCTCAGAGC-- 489 Query 27480 ATGGTCCGCAATGGTGTGTGTTGAAAACTGGCTTGTATGACGATGTGTACCGCGCTATCG 27539 || || || ||||| || || |||| || || || ||| | | | | Sbjct 488 --GGACCTCAGTGGTGCGTCCTGTGCTCTGGACTGAGTGGCGG-----ACCCCATTCTGG 436 Query 27540 ACTTCATT-----TACGAAGGCAATCAGATAACGTGCGGCGATAAGCTGGAATCCGTGAC 27594 || ||| || ||||| ||| |||||| ||||| || ||| | | || | || Sbjct 435 GGTTGATTATATCTATGAAGGTAATGCGATAACTTGCGGTGACAAGGTTTCAGCCATTAC 376 Query 27595 CGGGAAATTGCAGTTCGATATCA--GCAGC-CAGTACGACAAGCAACAGGAACACCTGCT 27651 || | ||| | ||| | ||| | || || | | || |||||||| | || Sbjct 375 AGGAA---TGCTGACGAATAAAAATGCATCGCAATATGGCGCTCACCAGGAACATATCCT 319 Query 27652 GTTTACTCCGTTGTTCAAAGCGGATAACGCCAGAGTTTTCGACCTTGAAGTTGAATCGTC 27711 | ||| || |||| ||||| ||| ||||||||||| || ||||| |||| || || Sbjct 318 TTATACCCCAATGTTTAAAGCCGATGGGGCCAGAGTTTTTGATCTTGAGCTTGATTCTTC 259 Query 27712 AACTGGCGTTGCGCAGTACGCTGACCGCCTTTTTCTCTCTGCAACCACTGACGGCATCAA 27771 ||| ||||||| |||| ||||| | | || | || ||||| | || || || || Sbjct 258 AACAGGCGTTGAGCAGGTTGCTGAAAGGTTATTCATTTCGGCAACAGCGGATGGAATTAA 199 Query 27772 TTACGGACGTGAGCAGATGATTGAGCAGAATGAACCGTTCGTTTACGACAAACGCGTTTT 27831 ||| || | ||||| ||||| ||||| || ||| || ||||| || | | Sbjct 198 TTATGGCAGAGAGCAAATGATCCCCTGGAATGCTCCTTTCACCTATGACAAGCGGGCGCT 139 Query 27832 GTGGAAGCGAGTCGGGCGCATCAGGAAAAATGTTGGCTTCAAATTGCGCGTTATCACGAA 27891 |||| |||| | || || |||||||||| | || ||| || | ||| | || Sbjct 138 CTGGAGGCGAATTGGCCGTGTCAGGAAAAACATAGGATTCCGTTTCAGGGTTGTAACTGC 79 Query 27892 GTCACCTGTAACTCTGTCTGGCTGCCAGATAAGGATTGAGTAATGGCTGA 27941 || ||||| || || || || |||||| | ||||| ||||||||||||| Sbjct 78 ATCCCCTGTGACACTTTCAGGATGCCAGGTGAGGATAGAGTAATGGCTGA 29 >seq61012 Length=2393 Score = 150 bits (166), Expect = 4e-32 Identities = 271/388 (70%), Gaps = 15/388 (4%) Strand=Plus/Minus Query 5141 AGATCGTTATCAATCTC--ATTGGAGTCAAACATTCCCATTGGGGATTTAACAGTGTCTG 5198 || ||||||||||||| ||||| || || | ||| || ||||||||||| | ||||| Sbjct 1014 AGGTCGTTATCAATCTGGAATTGG--TCGAATAGTCCGATGGGGGATTTAACCGGGTCTG 957 Query 5199 CACCGTTGTTTTTTGTGGTGAAAAAGAACTG---GTCAT-CACGGGTAAGGGTGCGAAGA 5254 |||| | ||||| || | | | ||||| |||| |||||| ||| Sbjct 956 TGCCGTCCGACTGGGTGGTAAAGTAATAGCGACCGTCATACACGCC----GGTGCGCAGA 901 Query 5255 ACTATAGTAAACATGCCTTCGACAGTGATTTTCTCGTCCAGCATTTTGCCGATAGTTTTC 5314 | ||| | ||||| || || ||||||||||| |||||||||||||||||||| || ||| Sbjct 900 GCAATACTGAACATCCCCTCAACAGTGATTTTTTCGTCCAGCATTTTGCCGATGGTCTTC 841 Query 5315 ATTTTCACGCGCCCCATAGGGGTTTCTTCGGTGTGTGCAAGAAAATAGACTCTCAGGTCA 5374 || || | || || || || ||||| ||||| || || ||||| || | || || Sbjct 840 ATCTTGATTCGGCCGGCTGGTGTCTCTTCCGTGTGAGCGAGGAAATAAACAATTAGATCG 781 Query 5375 TCAGGTGCATCCTGTGCAGCCTTAATCACCTCCCAT-GCGTGGCGGCCTATCTCAGTAAA 5433 || || |||| || ||| ||||| |||||| ||| || || ||||| || || Sbjct 780 TCTTCCGCTGCCTGCGCCGCCCGGATCACGTCCCATCGCGCCGC-CCCAATCTCTGTGAA 722 Query 5434 TTTATCAAACGATTTTTCTTCTGAGCGGCGCATAAACTCATTGCTCATCACATACTGGAA 5493 || || ||||| ||| | | ||| ||||| |||| || | |||||||||||| || Sbjct 721 CTTCTCGAACGACTTTCACTGCG-GCGCCGCATGAACTGGTTACCCATCACATACTGAAA 663 Query 5494 GTCATCAACAATAACGATTCTTTTCCCG 5521 || ||||| ||||| | | || ||| Sbjct 662 ATCGTCAACCGCAACGAATTTCTTACCG 635 >seq38457 Length=3703 Score = 145 bits (160), Expect = 2e-30 Identities = 161/207 (78%), Gaps = 12/207 (6%) Strand=Plus/Plus Query 15817 GTGTTCTTTCCGATGGTTTTCGTAAGCGACTTTGCGGTTTTTTAGAAACTGATCACAAAG 15876 ||| |||||||||| ||||||||| |||||||||||| ||||||||||| || |||||| Sbjct 2837 GTGCTCTTTCCGATAGTTTTCGTATGCGACTTTGCGGGTTTTTAGAAACGGACCACAAAA 2896 Query 15877 A-TAAATGCAAACGA-AGAAATGTATCTGGCCGTAGCTTAACCGCTAAACACCAGTGA-G 15933 | ||||||||||||| || | || | | | ||| |||| || || | | | | Sbjct 2897 AGTAAATGCAAACGATAGTGA-GTTTAAAGTAGCAGCCTAACGGCCAACGCGCTTTCATG 2955 Query 15934 GTATTCCAGTTCCTCATCAACGAATCTGGCGCACT--GGCCC---GGTGTGATTAATAA- 15987 ||||||||||||| | | ||||||||||||| | ||||| | |||||||||||| Sbjct 2956 GTATTCCAGTTCCATGTAACCGAATCTGGCGCATTGCGGCCCTGAGATGTGATTAATAAA 3015 Query 15988 --TGGGCACACAACAGGTAAGAGCATT 16012 |||||||||||||||||||||||| Sbjct 3016 TCAGGGCACACAACAGGTAAGAGCATT 3042 >seq34527 Length=8391 Score = 136 bits (150), Expect = 1e-27 Identities = 159/207 (77%), Gaps = 12/207 (6%) Strand=Plus/Plus Query 15817 GTGTTCTTTCCGATGGTTTTCGTAAGCGACTTTGCGGTTTTTTAGAAACTGATCACAAAG 15876 ||| |||||||||| ||||||||| |||||||||||| ||||||||||| || |||||| Sbjct 3080 GTGCTCTTTCCGATAGTTTTCGTATGCGACTTTGCGGGTTTTTAGAAACGGACCACAAAA 3139 Query 15877 A-TAAATGCAAACGA-AGAAATGTATCTGGCCGTAGCTTAACCGCTAAACACCAGTGA-G 15933 | ||||||||||| | || | || | | | ||| |||| || || | | | | Sbjct 3140 AGTAAATGCAAACAATAGTGA-GTTTAAAGTAGCAGCCTAACGGCCAACGCGCTTTCATG 3198 Query 15934 GTATTCCAGTTCCTCATCAACGAATCTGGCGCACT--GGCCC---GGTGTGATTAATAA- 15987 ||||||||||||| | | |||||||||| || | ||||| | |||||||||||| Sbjct 3199 GTATTCCAGTTCCATGTAACCGAATCTGGCACATTGCGGCCCTGAGATGTGATTAATAAA 3258 Query 15988 --TGGGCACACAACAGGTAAGAGCATT 16012 |||||||||||||||||||||||| Sbjct 3259 TCAGGGCACACAACAGGTAAGAGCATT 3285 >seq48546 Length=353 Score = 86.0 bits (94), Expect = 2e-12 Identities = 115/156 (74%), Gaps = 3/156 (2%) Strand=Plus/Minus Query 7530 GCAATTTTTCGCGCCAGTCGCTGCTCTTGCAT-TGCCTGTTCACGTTGAGCCTGTCTGCG 7588 || ||||| || ||||| || ||| ||| | | |||| ||||||| ||| |||||| Sbjct 284 GCGATTTTGCGTGCCAGGCG-TGCATCTGCTTCTACCTGCTCACGTTTAGCTGCTCTGCG 226 Query 7589 TGCTCTGCGGCGATTTCTGGCGTTATCGTCAGCCAGATATGTAATGACTACTGTCATGTT 7648 |||||| ||| |||||||||| | |||||||| || |||||||||||||| Sbjct 225 CGCTCTGTAGCGCGCCTTGGCGTTATCCTTTGCCAGATAAGTGATGACTACTGTCATAAG 166 Query 7649 GACCTCCGATGATTGACTTTGGCGGTGACGCGCCGG 7684 ||||| | | |||| ||| || ||||| | ||||| Sbjct 165 TACCTCAGGTAATTGGCTTAGGTGGTGA-GGGCCGG 131 >seq56092 Length=894 Score = 80.6 bits (88), Expect = 7e-11 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 9669 CCAAAGATGGCCATGCTTCTGGCTGTGCTGGAGTGGGGTGTTGAAGACGAGGAGTTGGCG 9728 || ||| | || ||| | || || |||||||||||||| | | || || ||| |||| Sbjct 458 CCGAAGTTCGCAATGTTACTTGCAGTGCTGGAGTGGGGAATCGTTGATGACGAGATGGCT 399 Query 9729 GAACTGGCTAAGAAAGTAGCCAGAATGCTGACAAAAGAAAAAGCCCCGAAGAACGGCGAA 9788 | | || | | || || | || |||||||||||||| ||| | ||| ||||| Sbjct 398 CATTTAGCGCGGCAGGTGGCAATGATACTGACAAAAGAAAA-GCCTC-AAGTTGCGCGAA 341 Query 9789 TT-CTTCGAGGCCTAATGTAGAAAGACTGGATCAATCCACGGGAGTAATTATGACAAAAC 9847 ||| ||||| | ||| || |||||||||||| ||| |||||||||||| |||| Sbjct 340 CAACTTTGAGGC-TGATGCGAAATGACTGGATCAATTCACAGGAGTAATTATGCCAAAGA 282 Query 9848 AACTCAGTCCTTACCAGGACAAAATTCACAAACACAT 9884 ||| | | ||||||| | | |||||| |||| Sbjct 281 AACACGTTGTGTACCAGGCGGATTTACACAAAAACAT 245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122239364387400