Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_002796.1 Length=40003 Score E Sequences producing significant alignments: (Bits) Value seq115941 147 6e-31 seq30831 80.6 7e-11 >seq115941 Length=788 Score = 147 bits (162), Expect = 6e-31 Identities = 415/627 (66%), Gaps = 24/627 (4%) Strand=Plus/Plus Query 5208 TTATTAAATACTTGATTAAACGTTATGCGGGAATCATCACTGCAACTAATACATTGCTTA 5267 |||| |||||| || || || ||||| || ||| || | ||||| | |||||| Sbjct 12 TTATCAAATACACTATCAAGCGCTATGCTGGTATCTCAACAGTTACTAACAGCTTGCTTG 71 Query 5268 AAGATACAGCAGAAAATATTCTTGCATGGTTATCAAGCTGGATTGCTAAGAAAGTGGTTG 5327 ||| | || |||||||| ||||| ||| | || |||||||| || ||||| |||| Sbjct 72 CTGATTCTGCTGAAAATATCCTTGCTTGGCTTTCTGATTGGATTGCAAA-AAAGTTGTTG 130 Query 5328 TGACTCGTAACCAAGCGATTATTGCAGCAATGGGTACAGTTCCTAAAAAACCAACAATCG 5387 | ||||||||| |||| || | | ||| || | ||| |||| ||||||||||| | Sbjct 131 TAACTCGTAACAAAGCTATCTTGGAAGCTATCGCTACGCTTCC--AAAAACCAACATTGA 188 Query 5388 CTAAATTTGATGATGTTATT-ACTATGATTAATACATCTGTTGATCCTGCGATTATCGCC 5446 | |||| ||||| | ||| || | | || | ||||| || || |||| Sbjct 189 CAAAATGGGATGACATCATTGACCTTCAAGC-TAAA---GTTGACCCAGCAATTAAGCAA 244 Query 5447 ACTTCAAGTCTT-TTGACTAACCAGTCAGGGTTGAATAAACTTGCTTTGGTTAAAACTGC 5505 || ||| |||| |||||||| ||| || || | | |||| || || | ||| Sbjct 245 ACATCAT-TCTTCTTGACTAATACGTCTGGATTTACTGCACTTAAGAAAGTAAAGAATGC 303 Query 5506 TGAAGGTAAATATTTGCTCGAACCAGACCCAACAAAACCTAATTCATATCTAATTAAAGG 5565 ||| | ||| | | |||| ||| || | ||||| ||| ||| || Sbjct 304 ATTTGGTGATTATCTAATGGAACGTGACGTAA-ATCACCTACAGGCTATTCAATCGCTGG 362 Query 5566 TAAAAAAGTTATTGTTGTTGCAGATCGCTGGCTTCCAAATA------GTGGATCAACAGT 5619 ||| | | || || || || |||||| | ||| ||||| ||| Sbjct 363 CTTCGCAGTCAAAGAAGTCGCTGACCGTTGGCTTGCTAATGCATCAGGTGGAGCAATG-- 420 Query 5620 TTATCCACTTTACTATGGAGATATGTCGCAAGCTATTACATTGTTTGACCGTGAAAACAT 5679 ||| | || | ||| ||| || ||||| |||| |||||||||||| || | || Sbjct 421 ----CCATTGTATTTTGGTGATTTGAAACAAGCCGTTACTTTGTTTGACCGTCAACAAAT 476 Query 5680 GTCATTACTTCCAACAAATATTGGTGCTGGTGCATTTGAAACTGATACTACTAAAATTCG 5739 |||||| || | || | ||| |||| |||||| ||||||||||| ||||||||| | || Sbjct 477 GTCATTGCTATCTACCA-TATCGGTGGTGGTGCGTTTGAAACTGACACTACTAAAGTACG 535 Query 5740 TGTAATCGATCGCTTCGATGTTAAAACTACTGACTCAGAAGCTTTAGTTGCTGGTTCATT 5799 ||| || || || || |||||| | | ||||| ||||||| || || | | |||||| Sbjct 536 TGTTATTGACCGTTTTGATGTTGTAGCAACTGATACAGAAGCGTTTGTACCAGCTTCATT 595 Query 5800 TACTGCAATTGCAGACCAAGTAGGTAA 5826 || || || || |||||| |||||| Sbjct 596 TAAAGCCATCGCTGACCAAAAAGGTAA 622 >seq30831 Length=459 Score = 80.6 bits (88), Expect = 7e-11 Identities = 86/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 18599 ACTCCTTGGATGCCTTCATTAAGCGAAGTCACAACTGCTGACTATCCAAGCTACATTGGT 18658 ||||| | ||||| ||| ||||||| ||||||||||||||||||||| | ||| || Sbjct 114 ACTCCATACATGCCATCAGCTAGCGAAGCCACAACTGCTGACTATCCAAGTTTCATCGGA 55 Query 18659 CAGTATACAGACTTTATTCAATATGACAGTGCTAAGCCATCCGACTACACTTGG 18712 || || |||||||||| ||| || ||| ||| || || ||||||||| Sbjct 54 CACTACACAGACTTTACACAAGTAGATAGTCTTAATCCTCGAGATTACACTTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127690117299000