Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq44974 132 1e-25 seq51865 109 1e-18 seq8712 100 6e-16 >seq44974 Length=881 Score = 132 bits (146), Expect = 1e-25 Identities = 299/444 (67%), Gaps = 14/444 (3%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCC-ATTTTCTG 101976 || || || || || || ||||| |||||||| |||||||| || || | | || ||||| Sbjct 712 GTAGCTTTCGCCGCCGTCGAAGGTATCTTCTTCAGTGGTGCCTTTGCCTACTATCTTCTG 653 Query 101977 GATCAAGAACAGGGGTATTTTG-CCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 | ||||||| | ||| | || || || ||||||| |||||| ||| | || || | | Sbjct 652 GCTCAAGAAGCGTGGTCTGATGTCCCGGACTCACCTTCTCCAACGAGCTAATCTCCCGCG 593 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGT----TGAAAAAGGGTTTTGTTGAT 102091 | || ||| | || || ||||||||| ||||| | | | | | | Sbjct 592 ATGA-GGTTTGCACACTGATTTTGCATGCCTGCTGCACTCTCACATGAAGCATCG----- 539 Query 102092 ACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 | ||| |||| ||| |||| |||||| |||| || || ||| || || ||||| Sbjct 538 -CGCCAGCAAGC-AAATCATTCAGGAAATTATCACAGATGCTGTCACCATCGAGCAAGAG 481 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 || | |||| | |||| | | || |||||| || |||||||| ||| Sbjct 480 TTCTTGACAGAGGCATTGCCATGCGCTCTCCTCGGTATGAACGCCACGTTGATGAAGCAG 421 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAAT 102271 ||||||||||| || || ||| || |||||| | |||| || ||| || || Sbjct 420 TACATTGAATTCGTCGCCGATCGCCTCCTGGTTGCACTGGGTAACGAGAAGGTGTACAAG 361 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 | |||||||||| |||||||| || |||||||| | ||||| ||||| ||| Sbjct 360 ACTGCCAACCCCTTTGATTTCATGGAGAACATTTCCCTAGGCGGCAAGACGAACTTCTTT 301 Query 102332 GAAAAGAGAGTCGCCGAGTATCAA 102355 || ||| |||||| |||||||||| Sbjct 300 GAGAAGCGAGTCGGCGAGTATCAA 277 >seq51865 Length=821 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || || || ||||| || |||||||||||||| ||||| | ||||| ||||| |||||| Sbjct 430 GTAGCGTTCGCTGCGGTGGAAGGAATCTTCTTCAGTGGCTCTTTCGCCTCCATCTTCTGG 489 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || | |||| || ||||||| ||||| ||| |||| || | ||| Sbjct 490 CTCAAGAAGCGTGGCCTCATGCCCGGCCTCACCTTTTCCAACGAGCTCATCTCGCGTGAC 549 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 ||||| | || ||||||||| ||| |||| || Sbjct 550 GAAGGCATGCACACCGACTTTGCCTGCCTGCTCTT 584 >seq8712 Length=1748 Score = 100 bits (110), Expect = 6e-16 Identities = 182/260 (70%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 94785 GCCGAGTCCTCCAGCAGTCTTGGAGATGATTGC-CGCCTCCTTAAGAGTATCATAAATAC 94843 ||||| || ||||| |||||||||| || || | | || | || || ||||| || | Sbjct 445 GCCGATGCCGCCAGCCATCTTGGAGATCATGGCGCACGTC--TGAGGGTGTCATAGATGC 502 Query 94844 CCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGT-GTGACT 94902 | || ||||| ||||| | || | | ||||||||| || || || ||| | ||| | Sbjct 503 CTTCGATGCTGTCATCCTTCAGTCG-ACAAGGAAGCAGGATGACAGCTGGCATTGTGGC- 560 Query 94903 GTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCA 94962 || ||| || || |||||||| || || ||||| || | | ||||||||||| | Sbjct 561 GTACCAGCGTTGAATAGTGTGGGCGAGGCGTGGGTGAAGAATTTGCTCGACATGAGGTTG 620 Query 94963 TATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATC 95022 || ||||| | |||| | | || ||| || ||||| || |||||||||||| Sbjct 621 TAGGTTTCCAGGACACGCTCCAGGTTGTCTCCCCAGATACCGACGGCAACACGCATAATC 680 Query 95023 ATGTCCTGAGGGCGCTCAAC 95042 |||| ||| || ||||| || Sbjct 681 ATGTGCTGTGGTCGCTCGAC 700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 987931920436500