Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_003313.1 Length=33106 Score E Sequences producing significant alignments: (Bits) Value seq36732 111 3e-20 seq36733 105 1e-18 seq36734 93.3 9e-15 seq39113 89.7 1e-13 >seq36732 Length=441 Score = 111 bits (122), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 9509 CATCGACCCAACCAAAGGCACGGCCACGGGTTACATCGCCAAATACATTTCAAAGAACAT 9568 |||||| || ||||||| || ||||||||| | || ||||| || || ||||| || Sbjct 176 CATCGATCCGGAAAAAGGCAGTGCTACGGGTTACGTGGCTAAATATATCTCTAAGAATAT 235 Query 9569 CGACGGCTACGCGATGGATGGCGACATATCAGACGAAACCGG-AAAGCCAG-TCAAAGAC 9626 ||||||||||||| |||||||||| | ||||||| ||| |||| || | || || Sbjct 236 CGACGGCTACGCGCTGGATGGCGAGCTGGACGACGAAAGCGGTAAAG--AGCTTAAGGAG 293 Query 9627 ATGGCACGCAACGTCAGCGCATGGAAAAGCCGCTGGAGTATTCGACAGTTCCAATTCTTC 9686 | || | | ||| || ||| |||||| ||| |||||||| || || | Sbjct 294 ACCGCGCCCGCCGTTTCTGCCTGGGCGGCACGCTGGCATATCCGACAGTTTCAGTTTGTA 353 Query 9687 GGTGGTGCGCCTGTCACCACATACCGCGAACTGCGCCGC 9725 || |||||||||||||| |||||||| ||||||||| Sbjct 354 GGCGGTGCGCCTGTCACGGTTTACCGCGAGCTGCGCCGC 392 >seq36733 Length=247 Score = 105 bits (116), Expect = 1e-18 Identities = 155/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 9509 CATCGACCCAACCAAAGGCACGGCCACGGGTTACATCGCCAAATACATTTCAAAGAACAT 9568 |||||| || ||||||| || ||||| ||| | || ||||| || || ||||| || Sbjct 34 CATCGATCCGGAAAAAGGCAGCGCTACGGGGTACGTGGCTAAATATATCTCTAAGAATAT 93 Query 9569 CGACGGCTACGCGATGGATGGCGACATATCAGACGAAACCGG-AAAGCCAG-TCAAAGAC 9626 ||||||||||||| |||||||||| | ||||||| ||| |||| || | ||||| Sbjct 94 CGACGGCTACGCGCTGGATGGCGAGCTGGACGACGAAAGCGGCAAAG--AGCTGAAAGAA 151 Query 9627 ATGGCACGCAACGTCAGCGCATGGAAAAGCCGCTGGAGTATTCGACAGTTCCAATTCTTC 9686 | || | | ||| || ||| |||||| ||| |||||||| || || || Sbjct 152 ACCGCCCCCGCCGTTTCTGCCTGGGCGGCACGCTGGCATATCCGACAGTTTCAGTTTGTC 211 Query 9687 GGTGGTGCGCCTGTCACCACATACCGCGAACTGCGC 9722 || |||||||| ||||| |||||||| |||||| Sbjct 212 GGCGGTGCGCCGGTCACGGTTTACCGCGAGCTGCGC 247 >seq36734 Length=281 Score = 93.3 bits (102), Expect = 9e-15 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 9509 CATCGACCCAACCAAAGGCACGGCCACGGGTTACATCGCCAAATACATTTCAAAGAACAT 9568 |||||| || ||||||| || ||||| ||| | || ||||| || || ||||| || Sbjct 85 CATCGATCCGGAAAAAGGCAGCGCTACGGGGTACGTGGCTAAATATATCTCTAAGAATAT 144 Query 9569 CGACGGCTACGCGATGGATGGCGACATATCAGACGAAACCGG-AAAGCCAG-TCAAAGAC 9626 ||||||||||||| |||||||||| | ||||||| ||| |||| || | ||||| Sbjct 145 CGACGGCTACGCGCTGGATGGCGAGCTGGACGACGAAAGCGGCAAAG--AGCTGAAAGAA 202 Query 9627 ATGGCACGCAACGTCAGCGCATGGAAAAGCCGCTGGAGTATTCGACAGTTCCAATTCTTC 9686 | || | | ||| |||||| |||||| ||| |||||||| || || | Sbjct 203 ACCGCCCCCGCCGTTTCTGCATGGGCGGCACGCTGGCATATCCGACAGTTTCAGTTTGTA 262 Query 9687 GGTGGTGCGCCTGTCAC 9703 || |||||||| ||||| Sbjct 263 GGCGGTGCGCCGGTCAC 279 >seq39113 Length=4314 Score = 89.7 bits (98), Expect = 1e-13 Identities = 156/224 (70%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 9509 CATCGACCCAACCAAAGGCACGGCCACGGGTTACATCGCCAAATACATTTCAAAGAACAT 9568 ||| || ||| | ||||||| || || || || ||||| |||||| | |||| ||||| Sbjct 2220 CATTGATCCAGCAAAAGGCAGCGCGACAGGCTATATCGCTAAATACGTAGCAAA-AACAT 2162 Query 9569 CGACGGCTACGCGATGGATGGCGACAT--ATCAGACGAAACCGGAAAGCCAGTCAAAGAC 9626 || ||||| ||| | || ||||| |||| |||| ||||||||| | || || Sbjct 2161 TGATGGCTATGCGCTCGAAGGCGAGCGGGATCAT--GAAAGCGGAAAGCCGCTGAAGGAA 2104 Query 9627 ATGGCACGCAACGTCAGCGCATGGAAAAGCCGCTGGAGTATTCGACAGTTCCAATTCTTC 9686 | ||| |||| || ||| ||||||| |||| || ||||| || || | Sbjct 2103 ACGGCGATGGCCGTCTCGGCCTGGGCGGCCCGCTGGCGTATCCGCCAGTTTCAGTTTATT 2044 Query 9687 GGTGGTGCGCCTGTCACCACATACCGCGAACTGCGCCGCCTTGC 9730 || ||||| || ||||| || ||||||||||||||||| || Sbjct 2043 GGCGGTGCACCCGTCACGGTTTATCGCGAACTGCGCCGCCTGGC 2000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 105653867104800