Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_003315.1 Length=31508 Score E Sequences producing significant alignments: (Bits) Value seq42620 105 1e-18 seq7403 105 1e-18 seq44536 98.7 2e-16 seq60962 96.9 7e-16 seq11212 96.9 7e-16 >seq42620 Length=558 Score = 105 bits (116), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 |||||||||||| ||||||||||||| ||||||| | ||||||| | ||||||||||| Sbjct 516 TGGTGGGTCGTGTAGGATTCGAACCTACGACCAATTGGTTAAAAGCCAACTGCTCTACCG 457 Query 418 ACTGAGCTAACGACCCAA 435 |||||||||||||||||| Sbjct 456 ACTGAGCTAACGACCCAA 439 >seq7403 Length=2901 Score = 105 bits (116), Expect = 1e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 |||||||||||| ||||||||||||| ||||||| | ||||||| | ||||||||||| Sbjct 1169 TGGTGGGTCGTGTAGGATTCGAACCTACGACCAATTGGTTAAAAGCCAACTGCTCTACCG 1110 Query 418 ACTGAGCTAACGACCCAATTA 438 |||||||||||||||||| || Sbjct 1109 ACTGAGCTAACGACCCAAATA 1089 >seq44536 Length=546 Score = 98.7 bits (108), Expect = 2e-16 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 733 ACCGCACTTTCTAAGTGCGAAGGGGCGAAGTGCGCATAACGCATCGTCATTTCGATAGTT 792 |||||| |||||| || |||||| || || ||||| ||| ||||||| ||| | Sbjct 297 ACCGCATCTTCTAAATGATCAGGGGCAAAATGGGCATATATCATTGTCATTTTTATA-TC 239 Query 793 GAA-TGACCGAGGATTTCTTTCAACACTAAAATATTCCCACCGTTCATCATAAAATGGCT 851 || |||||||| || || ||| || ||||| || ||||| |||||||| |||||||| Sbjct 238 GACGTGACCGAGAATGTCGCGCAAAACCAAAATGTTTCCACCATTCATCATGAAATGGCT 179 Query 852 GGCGAACGTATGGCGCAAAACGTGGGTTAGTTGCCC 887 ||| || ||||| | || |||||| || |||||| Sbjct 178 GGCAAATGTATGTCTCAGAACGTGAGTACATTGCCC 143 >seq60962 Length=2270 Score = 96.9 bits (106), Expect = 7e-16 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 718 AGCGGGTTGAATTTGACCGCACTTTCTAAGTGCGAAGGGGCGAAGTGCGCATAACGCATC 777 || || || | ||| || ||| ||||| || || || || ||||| |||||||| Sbjct 2128 AGTGGATTAAGTTTTACAGCATCCTCTAAATGTTCGGGCGCAAAATGCGCGTAACGCATT 2069 Query 778 GTCATTTCGATAGTTGAATGACCGAGGATTTCTTTCAACACTAAAATATTCCCACCGTTC 837 ||||||| || | || || || | | ||| ||||||||||| || |||||| Sbjct 2068 GTCATTTTAATGTCGGTGTGGCCAAGCACGCGCTGCAAAACTAAAATATTTCCGCCGTTC 2009 Query 838 ATCATAAAATGGCTGGCGAACGTATGGCGCAAAACGTGGGTTAGTTGCCCTTTGGGTAAC 897 |||||||| || || || || ||||||||||||||||| |||| || ||| || || Sbjct 2008 ATCATAAAGTGACTTGCAAAGGTATGGCGCAAAACGTGAGTTAACTGGCCTGCTGGCAAT 1949 Query 898 TCAATT 903 |||||| Sbjct 1948 TCAATT 1943 >seq11212 Length=2167 Score = 96.9 bits (106), Expect = 7e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 |||||||||||| |||||||||||| ||||||| | ||||||| | ||||||||||| Sbjct 408 TGGTGGGTCGTGTGGGATTCGAACCTACGACCAATTGGTTAAAAGCCAACTGCTCTACCG 349 Query 418 ACTGAGCTAACGACCC 433 |||||||||||||||| Sbjct 348 ACTGAGCTAACGACCC 333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100548179442000