Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq27570 168 2e-37 seq47386 109 2e-19 seq41478 84.2 8e-12 >seq27570 Length=526 Score = 168 bits (186), Expect = 2e-37 Identities = 137/166 (83%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 48641 GAAGAAGCCGAACCCAATCGACACGCAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACAT 48700 ||||||||||||||||||||||| || ||||| |||||||||||| ||||||| ||| Sbjct 22 GAAGAAGCCGAACCCAATCGACATTCATGTCGGAAGCCGCATCCGGCTGCGCCGCACCAT 81 Query 48701 CATCGGCATGAGCCAGGAGACGCTGGCTGCGCATCTCGGCATCACCTTCCAGCAGGTCCA 48760 | |||||||||||||| | ||||| || || || || |||||||||||| |||| Sbjct 82 GCTGGGCATGAGCCAGGAAAAGCTGGGTGAAAGCCTTGGAATTACCTTCCAGCAGATCCA 141 Query 48761 GAAATACGAAAAGGGCGCCAACCGCGTCGGCGCCAGCAGGCTGCAG 48806 |||||| ||||||||| |||||||||| ||||||||| | || ||| Sbjct 142 GAAATATGAAAAGGGCACCAACCGCGTTGGCGCCAGCCGTCTTCAG 187 >seq47386 Length=810 Score = 109 bits (120), Expect = 2e-19 Identities = 97/119 (82%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 48689 CCGCCGCAACATCATCGGCATGAGCCAGGAGACGCT-GGCTGCGCATCTCGGCATCACCT 48747 ||| |||| || || |||| |||||||||| ||| ||| || |||||| |||||| Sbjct 229 CCGGCGCACGATGATGGGCACCAGCCAGGAGAAGCTCGGCGAAGCC-CTCGGCGTCACCT 287 Query 48748 TCCAGCAGGTCCAGAAATACGAAAAGGGCGCCAACCGCGTCGGCGCCAGCAGGCTGCAG 48806 | |||||||||||||||||||| |||||| |||||||||||||||| ||| | || ||| Sbjct 288 TTCAGCAGGTCCAGAAATACGAGAAGGGCACCAACCGCGTCGGCGCGAGCCGCCTCCAG 346 >seq41478 Length=723 Score = 84.2 bits (92), Expect = 8e-12 Identities = 107/145 (74%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 41862 GCAATGGCGATCGGCTGCACCCAAATCGGCTGATTAGAC--AGCATGAACGTCTCGCCGG 41919 || |||||||||||| ||||||| | |||| | | | | |||| ||| ||||| || | Sbjct 42 GCCATGGCGATCGGCCGCACCCATACCGGCAGGCT-GCCTGAGCACGAAGGTCTCCCCCG 100 Query 41920 TCATGGCGAGCAGCAGTGTGGTTCCCATAACGTCGGCGATCGCAGTCGCCGCATCCGGAG 41979 | ||| || || || ||||| ||||| || |||||||| || | ||||| | | Sbjct 101 CCTCGGCCAGGAGGAGGGTGGTGCCCATCACCTCGGCGATGGCCTTGGCCGCCCTGCGCG 160 Query 41980 GTACCGCGTTCCCGATGCGCTCTCG 42004 |||||||||| ||||| ||||| || Sbjct 161 GTACCGCGTTGCCGATCCGCTCACG 185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183325498570800