Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq43510 114 1e-20 seq2347 84.2 2e-11 >seq43510 Length=3912 Score = 114 bits (126), Expect = 1e-20 Identities = 218/317 (69%), Gaps = 3/317 (1%) Strand=Plus/Plus Query 20882 CAGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTT 20941 || |||||| ||||| ||||| || | | ||| || || | || | |||||| Sbjct 527 CAACCGCGGCAACGGCCGCGGCGTGCGCGCCAGTTGTTCGCGCGCCTGTTCGAAGTGGTT 586 Query 20942 GTTGTAA-ACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGA 21000 | || | | ||| || || |||| |||||||| || || ||| | |||||| ||| Sbjct 587 GGAGTTACAGGTGCGCATCGCCCAGCGTGTGCACGAAATCGCCCACGCCCAGGCCGGTGG 646 Query 21001 CGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGC 21060 | || || | || | ||||| || ||||||||||||||||| ||||| || || ||| Sbjct 647 CCTGCGCCACCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCCAGGA 706 Query 21061 CCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGC-TCCCCCCGAGCCACGTAAAAC 21119 |||||| || | |||||||||||||||| ||| | || ||| ||||||| ||| Sbjct 707 AAATGTCGCCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCGA-CCACGTAGAAC 765 Query 21120 TGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCG 21179 || ||| ||| || || || |||||| ||| || || || |||||| ||| Sbjct 766 TGGAACAGGCTGTGGCACGGCATCAGCGCCATCTGCGGCAGTTCGGCCACGTTCCAGGCG 825 Query 21180 CACATAACGATGCGCCG 21196 | || || | ||||| Sbjct 826 CTGATCACCAGCCGCCG 842 >seq2347 Length=4848 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 20976 AAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTG 21035 || || ||||| ||| || ||||| || || | || ||||| || || |||||| Sbjct 1528 AATTCGCCCGGCTGCAGCCCGGTGACCTGGGCCACCATCAGGGTCAGCAGCGCATAGCTG 1587 Query 21036 GCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGAC 21095 |||||||| || || || |||||| ||||||||||| | ||| |||||||||||| | Sbjct 1588 GCGATGTTGAAGGGCACGCCGAGGAAGATGTCGGCGGAGCGCTGATACAGCTGGCAGCTC 1647 Query 21096 A-GCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 | || || || || || || ||||| ||| | || || || || || |||||| Sbjct 1648 AGGCGACCATCG-GCGACATAGAACTGGAACAGCGCATGGCACGGCGGCAGCGCCATC 1704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427096678344000