Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq51865 129 6e-25 seq28556 95.1 1e-14 seq29103 91.5 1e-13 seq97857 86.0 6e-12 seq2641 82.4 8e-11 >seq51865 Length=821 Score = 129 bits (142), Expect = 6e-25 Identities = 317/475 (67%), Gaps = 8/475 (2%) Strand=Plus/Plus Query 52549 GTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAA-ACGACAAAGC 52607 ||||| || | |||||||||| ||| ||||| || |||||| || | || | Sbjct 351 GTTCCCTGCATCCGCAAAAAGGCTGACTGGGCCCTGCGGTGGATCTCCGGACAAAAACTC 410 Query 52608 CACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAG 52667 ||| |||||| | |||||||| ||||| ||| |||||||| | || || || Sbjct 411 CACCTTTGCCAACCGTCTGGTAGCGTTCGCTGCGGTGGAAGGAATCTTCTTCAGTGGCTC 470 Query 52668 TTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCA 52726 ||| || | || || | |||| || | ||| | | |||||||||||||| ||| || Sbjct 471 TTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGCC-TCATGCCCGGCCTCACCTTTTCCA 529 Query 52727 ACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTG-TATTATAAT 52785 ||||| | || ||||| |||||||| |||||||| || ||||| || || | || | Sbjct 530 ACGAGCTCATCTCGCGTGACGAAGGCATGCACACCGACTTTGCCTGCCTGCTCTTCT--- 586 Query 52786 ACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACATGTTTAAAGAGGCCGTC 52845 ||| | | || | || | || | | || ||| | | ||||||||| Sbjct 587 -CGCTCCTCAACAACCGCCCCTCCAAAGACGCCGTGCAAGCCATCATCACCGAGGCCGTC 645 Query 52846 GACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACGCG 52905 || || || || ||||| | | ||||| | || | || | ||||||||||| Sbjct 646 GAGATCGAGAAGGAGTTCCTGTCCGACGCCCTGCCTTGTGCGCTGCTCGGCATGAACGCC 705 Query 52906 ACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGTCAG 52965 ||| | |||||| ||||||| |||||||| || ||| | ||| || | ||||| | Sbjct 706 ACCCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGGCTGCTGCTCTCCCTCGGCAAC 765 Query 52966 CCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCG 53020 ||| ||||| | || ||||| ||| |||||| | ||||| ||||||| Sbjct 766 ACGAGGTACTACCACGCCACCAACCCTTTTGACTTTATGGAGAACATCTCGCTCG 820 >seq28556 Length=388 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | || ||||||| |||||||| ||||||||||| ||||| Sbjct 56 CCGCCACGAAGTCGAAGGACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAG 115 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| ||||| || || || |||| ||||| ||||| || ||||| Sbjct 116 AGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGA 175 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| || || | | || | || || | | ||| || Sbjct 176 ATGCCTTCTTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTATCCGAAGACTCTACT 235 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||||||||| | || || ||||| |||||||| Sbjct 236 TCTAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 282 >seq29103 Length=1863 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/219 (70%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAAT-CGTAGACTCTTTTTGAATGTTATAATCGCT 139596 || ||||| | ||| | ||| ||||| | ||| ||||| ||||||||||| || || Sbjct 1062 CCACCTCGGAGACGAAGAACCAAGTGGACGCGTCGACTCCTTTTGAATGTTGTAGTCTGC 1121 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| || ||||| || || ||| ||||||| || ||||| || || || Sbjct 1122 AAGAGTGCGGCCGTCCTCAAGCTGCTT-CCGGCA-AGATCAGGCGCTGCTGGTCCGGGGG 1179 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | ||||||| || ||| || Sbjct 1180 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGAC 1239 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAA 139755 ||||| ||| | |||||||| |||| || || ||||| Sbjct 1240 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1278 >seq97857 Length=911 Score = 86.0 bits (94), Expect = 6e-12 Identities = 186/278 (67%), Gaps = 3/278 (1%) Strand=Plus/Plus Query 153912 GGACATTCGTTGGGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGCATAAAT 153971 ||||| ||||||||||||||||| | ||| ||||| ||||| || || ||| || Sbjct 586 GGACACTCGTTGGGACACATCAGAGTCCACTCCCCATTCTCTTGGACACGCTTCATGAAG 645 Query 153972 ATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATG 154031 | ||| || | ||| ||||||| | | |||||| || || || ||||| | Sbjct 646 AGATCCGGGATCCACAGGGCGTAGAATAAGTCGCGAGCGCGAACTTCCTCTTTGCCATGG 705 Query 154032 TTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACTGCT 154091 || ||| | || |||| | | | ||| ||| ||||| || || | ||| | ||| Sbjct 706 TTCTTACGAAGGTCCAAGAAGCCAAATATATCGGCGTGCCATGGCTCGAGGTAGATTGCG 765 Query 154092 TGAGCGCCTTTACGCTTG---CCGCCCTGATTTACGTGACGCACCATATTGTTGAAAACC 154148 || || ||||||| || ||||||| |||| ||| || | |||||| | || Sbjct 766 AATGCTCCGGGACGCTTGTTACCACCCTGATCGACGTAACGGGCCGTGTTGTTGTAGACG 825 Query 154149 CGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGT 154186 || | |||||| | || ||| ||| || ||||| || Sbjct 826 CGTAACATGGGGATGAGCCCGTTGGACGTTCCGTTAGT 863 >seq2641 Length=263 Score = 82.4 bits (90), Expect = 8e-11 Identities = 127/178 (71%), Gaps = 5/178 (3%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG--TCTTCGAGCTGTTTAC 139625 ||||| ||||| |||||||| |||||| | || |||| ||||| | ||| |||| Sbjct 216 GTAGATTCTTTCTGAATGTTGTAATCGGCAAGGGT--TCGACCATCTTCCAACTGCTTAC 159 Query 139626 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTT 139685 ||||| |||| || ||||| |||||||| || || || || ||||| ||| ||| || Sbjct 158 CAGCAAAGATGAGTCGTTGTTGATCGGGGGGAATACCCTCCTTGTCT-TGAATTTGGTTT 100 Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAA 139743 | | | || | || || | | || || |||| ||| | |||||||||||||| Sbjct 99 TGACATTGTCGATAGTATCCGAAGATTCAACTTCAAGGGTGATAGTCTTGCCGGTCAA 42 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495256035760000