Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq51865 102 1e-16 seq104936 91.5 2e-13 seq44974 86.0 9e-12 >seq51865 Length=821 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||||| || ||||| | || || ||||||||||| ||||| Sbjct 575 CAGGCAAAGTCGGTGTGCATGCCTTCGTCACGCGAGATGAGCTCGTTGGAAAAGGTGAGG 516 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| ||||||||||| || ||||| || ||||| || || || ||| |||||| Sbjct 515 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAG 456 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAG 50108 |||||||| || || || || || || || Sbjct 455 ATTCCTTCCACCGCAGCGAACGCTACCAG 427 >seq104936 Length=468 Score = 91.5 bits (100), Expect = 2e-13 Identities = 281/418 (67%), Gaps = 14/418 (3%) Strand=Plus/Minus Query 79132 CCCAA-AATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAG 79190 ||||| ||||||| |||||| || || ||||| || |||| || | | ||| | | Sbjct 415 CCCAAGAATTTGACTAGTTGAGGCGGTGGGCATGGGGGCCAATAACAGAGAATTCCGTAT 356 Query 79191 ACCGTATGATCTG-ATTTTATCTTTTAGAGAT-TCCCAATCCCAAAGATCAGACGGGACA 79248 || || ||| | || ||||| | || | ||||||||||| | || | || Sbjct 355 CCCAG-TGGTCTTCACCTTTTCTTTCA-AGCTATCCCAATCCCACAATTCTGTAGGCTTG 298 Query 79249 ACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCA 79308 |||||||| | ||| |||| ||||| || | |||||| || |||| | | || ||| Sbjct 297 ACATTCCACATGTCAAATTGAAGAATGCCTTGACTAGCAGGAGAGCCTG-GAAGGTCTCA 239 Query 79309 TAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTT 79368 ||||| || ||| | |||| || ||| |||||||| ||| ||| ||| | || Sbjct 238 TAAGGACCGTCCGTAACGGCCAACTCATTCGAAGCCTCTAAGGCTGCGTGATACAGAGTC 179 Query 79369 TCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGGCTA--TCAAATGGATAATTTAAG 79425 |||||||||| |||| || | |||| || || |||| | ||||| ||| | || Sbjct 178 TCGAAAATCTGAATATTCAGTTTCTTG-GCCTC-AGGCGAAATCAAACGGAAGCCTCAAA 121 Query 79426 AGAATAAACGCGTCTGCTAATCCTT-GAACACCAATACCGATAGGTCTATGTCTCTTATT 79484 | || || || || | |||| | || || || || || || | ||| ||| | || Sbjct 120 ATTTGGAATGCATCGGCCAGCCCTTTGCACCCCGATTCCAATTGGACGATG-CTCATGTT 62 Query 79485 AGAAATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541 || ||| | | ||||| | || |||||||| || || ||||||||||| || || Sbjct 61 CGATTTTTTTGGCCTCTGGCACCGGGTAATAATTGATGTCAATAATTTTATTCAGGTT 4 >seq44974 Length=881 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/148 (74%), Gaps = 3/148 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 ||||| ||||| ||||| ||| || || | ||||| |||||||| || |||||| Sbjct 566 CATGCAAAATCAGTGTGCAAACC-TCATCGCGGGAGATTAGCTCGTTGGAGAAGGTGAGT 624 Query 50020 CCGGG-CATTAGGCCACGCTTTTTAAGCCAAAATAT-GGACGCAAATGACCCAGAAAAGA 50077 ||||| ||| || |||||||| || ||||| || || | | ||||| | ||| |||| Sbjct 625 CCGGGACATCAGACCACGCTTCTTGAGCCAGAAGATAGTAGGCAAAGGCACCACTGAAGA 684 Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAAC 50105 |||| ||||| || ||||| || || || Sbjct 685 AGATACCTTCGACGGCGGCGAAAGCTAC 712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717098919692000