Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq8712 152 7e-32 seq51865 93.3 6e-14 seq44974 84.2 3e-11 >seq8712 Length=1748 Score = 152 bits (168), Expect = 7e-32 Identities = 460/704 (65%), Gaps = 20/704 (3%) Strand=Plus/Plus Query 71971 AATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTT 72028 || ||||| ||||| || || ||||| | | ||| || || | || ||| || || | Sbjct 116 AAGCCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCGCCGT--TCTTTTCAACACGCT 173 Query 72029 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGT 72088 |||| || | ||| |||||||| ||||| | || || || | || | | ||||| | Sbjct 174 TCATGAACAAATCGGGAATCCATAGAGCAAGGAAGAGGTCACGGGCACGAACTTCCTCCT 233 Query 72089 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 72148 | || |||||| || ||||||||| | | | || | |||||||| |||| || Sbjct 234 TGCCGTGGTTCTTTCGCAGGTCGAGGAACTCAAACACGTCTGCGTGCCACGGCTCCAGGT 293 Query 72149 ATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 72208 | |||| || | | || || || ||||| || ||||| || | |||||| |||||||| | Sbjct 294 AAATGGGCAAAGCACCAGGTCGCTTGTTGCCACCCTGGTCGACGTATCTGGCGGTGTTGT 353 Query 72209 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 72268 | | || | | ||| |||| | || || || | || ||||| |||| || || Sbjct 354 TGAACACGCGAAGCATGGGAACGACGCCGTTTGAGGTGCCGTTGGTGCCGGCAATGTACG 413 Query 72269 TTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 72328 ||| |||||||||| | | || || || || || ||||| || ||||| | Sbjct 414 AGCCAGTGGCACGAATGCGGTGGACGTTCAGGCCGATGCCGCCAGCCATCTTGGAGATCA 473 Query 72329 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 72388 ||||| ||| | | || ||||||||||| || || || |||||| ||| || | | Sbjct 474 TGGCGCA-CGTCTGAGGGTGTCATAGATGCCTTCGATGCTGTCATCCTTCA-GTCGACAA 531 Query 72389 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 72448 | || ||| |||| ||| | || || || || |||| || || || |||| Sbjct 532 GGAAGCAGGATGACAGCTGGCATTGTGGCGTACCAGCGTTGAATAGTGTGGGCGAGGCGT 591 Query 72449 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTC----AATAGCT---GATTCTATA 72501 | || || |||| |||| || ||||| || || | ||| | || | | Sbjct 592 GGGTGAAGAATTTGCTCGACATGAGGTTGTAGGTTTCCAGGACACGCTCCAGGTTGTCT- 650 Query 72502 TCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATC 72561 |||| || || || || |||||||| | ||| ||||| |||| || || ||| Sbjct 651 CCCCA------GATACCGACGGCAACACGCATAATCATGTGCTGTGGTCGCTCGACAATC 704 Query 72562 TTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 72621 ||| || | || | | |||||| |||| ||| || || ||||| || | ||| Sbjct 705 TTGCCGTTGAGCTTGAGGAGATAGGATCGCTCCAGAGTCTTGAAGCCAAAGTACTGGTAG 764 Query 72622 GAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 ||||||| ||||| | ||| | || | ||||| ||||| Sbjct 765 TTGAAGTCTCTGTCGTAGACAATGGCAGAGTCGAGTTCCTCCTT 808 >seq51865 Length=821 Score = 93.3 bits (102), Expect = 6e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 42107 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA 42166 ||||||||||| ||||| |||||||| ||||||||||| || ||||| || || || || Sbjct 533 TCGTTGGAAAAGGTGAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCG 474 Query 42167 AATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 || || ||| |||||||||||||| || || || || || Sbjct 473 AAAGAGCCACTGAAGAAGATTCCTTCCACCGCAGCGAACGC 433 >seq44974 Length=881 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/145 (74%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 ||||| ||||| ||||| ||| ||||| | |||| |||||||| || |||||| Sbjct 566 CATGCAAAATCAGTGTGCAAACC-TCATCGCGGGAGATTAGCTCGTTGGAGAAGGTGAGT 624 Query 42125 CCGGG-CATTAGGCCACGCTTTTTAAGCCAAAATATAG-ACGCAAATGATCCAGAAAAGA 42182 ||||| ||| || |||||||| || ||||| || |||| | ||||| | ||| |||| Sbjct 625 CCGGGACATCAGACCACGCTTCTTGAGCCAGAAGATAGTAGGCAAAGGCACCACTGAAGA 684 Query 42183 AGATTCCTTCTACTGCCGCAAAGGC 42207 |||| ||||| || || || || || Sbjct 685 AGATACCTTCGACGGCGGCGAAAGC 709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670046082028000