Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq95708 134 2e-26 seq51865 118 2e-21 seq108015 98.7 1e-15 seq8712 96.9 5e-15 >seq95708 Length=954 Score = 134 bits (148), Expect = 2e-26 Identities = 197/270 (73%), Gaps = 9/270 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| ||||| |||| ||||| |||||| ||||||| | ||||| Sbjct 347 ATTTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACGC-CGAAGAGATTGATCTC 289 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||| || ||| |||||||| | | ||| ||| || ||| | | || || || Sbjct 288 TCCAAAGATCTGCACGATTGGAACAACCGTCTGAACGACGACGAGAAATACTTCATCTCC 229 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG-TTGACACG 125197 ||||| | || ||||| || | ||| || || || |||||||| || || |||| || Sbjct 228 CACATCCTCGCATTCTTCGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGAG-CG 170 Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGT-GCTTTTACGGATTCCAAATCAT 125254 ||| |||| | ||| | ||||| | |||| |||||||||||||||| ||||| Sbjct 169 TTTCAGCGGAGAGGT--CCAAGTGCCAGAAGC-TCGTTGCTTTTACGGATTCCAGATCAT 113 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTC 125284 ||| || ||| | |||||||| | ||||| Sbjct 112 GATGGAAAACATCCACTCGGAGACTTACTC 83 >seq51865 Length=821 Score = 118 bits (130), Expect = 2e-21 Identities = 178/252 (71%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 125063 CGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGA 125122 ||| ||| | ||||| ||||||||||| |||| ||| | | || | || || || Sbjct 6 CGAGGAGATTGATCTCTCCAAGGACCTCCACGACTGGAACAAACGACTAACGACGAC-GA 64 Query 125123 GCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGA 125182 ||| || || || ||| | | ||||||||||||| ||| || || ||||||||||| Sbjct 65 GCGCTTCTTCATCTCCCACGTCCTCGCCTTCTTTGCCGCCTCGGACGGCATCGTCAACGA 124 Query 125183 CAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGG 125242 || || | || |||||| ||| | || ||||||| | ||||| ||||| Sbjct 125 GAACTTGGTCGAGCGCTTCTCTAGCGAGGTACAAATCCCAGAGGCGCGCTGCTTCTACGG 184 Query 125243 ATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTA 125302 ||||| |||||||| |||||||| |||||||| | |||||| || || |||| || Sbjct 185 CTTCCAGATCATGATGGAGAACGTCCACTCGGAGACGTACTCGTTGCTCATCGACACCTA 244 Query 125303 CATTCGCGATCC 125314 ||| |||| || Sbjct 245 CATCAGCGAGCC 256 Score = 111 bits (122), Expect = 2e-19 Identities = 272/403 (67%), Gaps = 16/403 (4%) Strand=Plus/Plus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATG-ACGACAAGTCTTCGTACGC 125419 || || ||||||||| | |||| | ||||||||| | || | || || | | || Sbjct 360 ATCCGCAAAAAGGCTGACTGGGCCCTGCGGTGGATCTCCGGACAAAAACTCCACCTTTGC 419 Query 125420 CGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGC 125479 | || | ||||| || ||||| || || || || |||||||| || ||| || | Sbjct 420 CAACCGTCTGGTAGCGTTCGCTGCGGTGGAAGGAATCTTCTTCAGTGGCTCTTTCGCCTC 479 Query 125480 CATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTAT 125539 |||||| |||||||||||||| || ||||||||||| || || |||||| | || Sbjct 480 CATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCACCTTTTCCAACGAGCTCAT 539 Query 125540 ATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTG 125597 || || ||||| ||| | ||| ||||||||| || || || |||| || | | Sbjct 540 CTCGCGTGACGAAGGCATGCACACCGACTTTGCCTGCCTGCTCTTCTCGCTCCTCAACAA 599 Query 125598 CGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGG 125657 | ||| | || | | || || || | ||||| | ||||| ||||| | Sbjct 600 CCGCCC--CTCCAAAGAC-GCCGTGCAA--GCCATCA------TCACCGAGGCCGTCGAG 648 Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACC-GGTCAGCATGATTGGCATGAACTGCAA 125716 || || | ||||| || |||| |||| || || || || | ||||||||| || Sbjct 649 ATCGAGAAGGAGTTCCTGTCCGACGCCCTGCCTTGTGCGC-TGCTCGGCATGAACGCCAC 707 Query 125717 GCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTG 125759 || |||||| ||||||| |||||||| || || || || ||| Sbjct 708 CCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGGCTGCTG 750 >seq108015 Length=311 Score = 98.7 bits (108), Expect = 1e-15 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||| || || |||| ||| | | || ||||| | |||| | || || || Sbjct 309 TCCAAAGATCTCCACGACTGGAACAACCGCTTGACCGCCGACGAGCAGTACTTCATCTCT 250 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 || ||| | ||||||||||||| ||||||||| ||||||||||| || || ||||| ||| Sbjct 249 CATATTCTCGCCTTCTTTGCCGCCTCCGATGGTATCGTCAACGAGAACCTGGTTGA-ACG 191 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256 ||| ||| | ||||| |||| ||| |||||||| || ||||| ||||||| Sbjct 190 TTTCAGCGCGGAGGTTCAAATTCCTGAGG-CTCGCTGCTTTTATGGCTTCCAGATCATGA 132 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 | ||||| | || || |||| |||||| || ||||| Sbjct 131 TGGAGAATATTCATTCTGAAACATACTCTCTTCTCATTGA 92 >seq8712 Length=1748 Score = 96.9 bits (106), Expect = 5e-15 Identities = 175/256 (68%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 ||||||| ||||| ||||| || || || || ||| | || | ||| |||| || | Sbjct 341 GATACGTCGACCAGGGTGGCAACAAGCGACCTGGTGCTTTGCCCATTTACCTGGAGCCGT 282 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||||| ||||| ||||| || |||| |||| || ||| ||| || || | | Sbjct 281 GGCACGCAGACGTGTTTGAGTTCCTCGACCTGCGAAAGAACCACGGCAAGGAGGAAGTTC 222 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 | ||| | ||| | || ||| || ||| | || ||||||||||||||||| || | Sbjct 221 GTGCCCGTGACCTCTTCCTTGCTCTATGGATTCCCGATTTGTTCATGAAGCGTGTTGAAA 162 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 | ||| |||||| || ||||||||| || | || || || | || |||| | Sbjct 161 AGAACGGCGACTGGACTCTCATGTGCCCCAACGAATGCCCTGGCTTGGCTGACTGCTACG 102 Query 97105 GCGAAGAGTTTGAGGC 97120 | || || || ||||| Sbjct 101 GTGAGGAATTCGAGGC 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739852199828000