Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_004303.1 Length=43075 Score E Sequences producing significant alignments: (Bits) Value seq115158 673 0.0 seq123790 273 6e-69 seq125025 219 1e-52 seq125381 212 2e-50 seq115959 114 4e-21 >seq115158 Length=1188 Score = 673 bits (746), Expect = 0.0 Identities = 662/845 (78%), Gaps = 7/845 (1%) Strand=Plus/Plus Query 38950 GATTAATTTAAAATTGCGACTAAAAAATAAAGTGACATTATCAGCTCTTATCTCAGCAGT 39009 ||||||||| ||||| || | |||||||| ||| || |||||||||||||||||| Sbjct 289 GATTAATTTTAAATTACGTTTGCAAAATAAAACTACACTAGTAGCTCTTATCTCAGCAGT 348 Query 39010 ATTCGTTATGTTGGGACAATTTGGACTTGATATTCCACACAATATTCAAGATGGTATCAG 39069 |||| |||||||| |||||| || ||||| |||||||||||||| ||||| | | | | Sbjct 349 ATTCCTTATGTTGCAACAATTAGGGCTTGAAATTCCACACAATATCCAAGACGCTGTAAA 408 Query 39070 TACTCT-ATTGATGATATTGGTTATTCTCGGAATCGTTACCGACCCAACAACTAAGGGGA 39128 ||| | |||| || |||||||| ||||||||||||||||||||||| |||||||||| Sbjct 409 TACATTCATTGCA-ATTTTGGTTATCCTCGGAATCGTTACCGACCCAACCACTAAGGGGA 467 Query 39129 TTGCTGACAGCGAACGAGCATTGACTTACATCAAACCACTAGATGACAATGAAGGAAAAT 39188 |||| ||||||||||||||||||| || |||||||||| || || |||||||||| Sbjct 468 TTGCAGACAGCGAACGAGCATTGAGCTATGAACAACCACTAGACGAAAAGGAAGGAAAAT 527 Query 39189 AGTATGAGCG-TAAAACAAAAACTAGTAGATGGAATGGTTAACCTTAGAGGAAAAATCAC 39247 |||||||||| || ||||| | ||| || | | ||||||| | |||| ||| | || Sbjct 528 AGTATGAGCGATACAACAATCTATTGTAAATTGGTTTGTTAACCATCGAGGCAAATTGAC 587 Query 39248 TTACTCGATGTTTGGTTCTCGTGATGGTTCTGATGGAACTGGTGACTGTTCGGGTATTAT 39307 || || |||| ||| || || | || | || || || | |||||| || ||| || Sbjct 588 CTATTCAATGTATGGGTCACGCAACGGAGCAGACGGTACAGCTGACTGCTCTGGTTCCAT 647 Query 39308 GTCTAGAGTCTTGAAAGAGGCAGGAATTAATATCCAAGGGTTGCCATCGACTGTAACTCT 39367 || || | | ||||| || || ||| ||| ||||| | ||||| ||||| || || Sbjct 648 ATCACAAGCCCTAAAAGAAGCTGGTATTGGTATTCAAGGTCTACCATCTACTGTTACACT 707 Query 39368 TGGACAACAACTAGCAAATAATGGCTTCTATCGTATAAGTCGTAACGAAGACTGGAATGC 39427 || |||||||| || || ||||| |||||||| ||||| ||| |||| ||| |||| Sbjct 708 AGGTCAACAACTTGCCAAAAATGGATTCTATCGAGTAAGTATTAATCAAGATTGGGATGC 767 Query 39428 TGAAACTGGTGATGTTGTGTTGATGTCTTGGGGTACTGATATGTCTAGCTCAGGTGGAGC 39487 | || || ||| ||||||| ||||| |||||| |||||||||| | || || ||||| Sbjct 768 TTTGACAGGCGATATTGTGTTAATGTCATGGGGTTCTGATATGTCCACATCTGGCGGAGC 827 Query 39488 TGGTGGCCATGTCGGTGTTATGATGGATGCTACATACTTTATCAGTTGCGACTATTCAAC 39547 ||| || || || ||||| ||||||||||||||||||||||| |||||||| |||||||| Sbjct 828 TGGAGGGCACGTTGGTGTCATGATGGATGCTACATACTTTATTAGTTGCGATTATTCAAC 887 Query 39548 TCAAGGAGCAGTAGGACAAGCTATCAATACGTATCCGTGGAATGATTACTATGCAGCTAA 39607 |||||| ||| || |||||||||||||| || ||||||||||| ||||||||||| || Sbjct 888 TCAAGGGGCACCTGGGCAAGCTATCAATACTTACCCGTGGAATGACTACTATGCAGCGAA 947 Query 39608 TAAGCCTGCATATATCGAAGTTTGGCGCTATGCTGACTCTGCCCCACAGACTAATAACAA 39667 ||||||||||||||||| || ||||| ||| ||||| |||| || || || || ||| | Sbjct 948 CAAGCCTGCATATATCGAGGTGTGGCGTTATTCTGACACTGCACCGCAAACCAACAACCA 1007 Query 39668 AGCTAATACAGCAG-TAG-TAACAAAAGAGAAGGCATATTATGAAGCCAATGAAGTCAAA 39725 |||||||||||||| ||| | || || | ||||| || |||||||| |||||||| || Sbjct 1008 AGCTAATACAGCAGCTAGACACCACAACAAAAGGCTTACTATGAAGCTAATGAAGTTCAA 1067 Query 39726 TACGTTAAT-GGAATCTGGCAGATTAGATGTGATTACTTAACACC-AATTGGATTCGATT 39783 | ||||||| ||||| |||||||| | |||||| || || |||| |||||||||| | Sbjct 1068 TTCGTTAATGGGAATTTGGCAGATCAAATGTGACTATTTGGCACCTGGTTGGATTCGACT 1127 Query 39784 GGCTT 39788 || || Sbjct 1128 GGGTT 1132 >seq123790 Length=336 Score = 273 bits (302), Expect = 6e-69 Identities = 218/261 (84%), Gaps = 1/261 (0%) Strand=Plus/Plus Query 12591 GCCATTAACACAATATATACAGAAATTGGCATTTTAACACCTCGAAAAGTAGTCCAACTA 12650 || |||||||| |||||||||||||||||| |||||||||||| || ||| ||||| || Sbjct 1 GCAATTAACACTGTATATACAGAAATTGGCAGTTTAACACCTCGCAAGGTAATCCAATTA 60 Query 12651 GAAGGACTTCTATCAAGAGAATTATTCGGAAAGATTGCTAAGCACGTCTTTAACAAGTAC 12710 || || ||||| || ||||| ||||||| ||||| || ||| |||||||||| ||||| Sbjct 61 GAGGGTCTTCTGTCTAGAGAGCTATTCGGTAAGATAGCGAAGTACGTCTTTAATAAGTAT 120 Query 12711 GAATGGCCAGAAAGCCTAGATAGCGAAGTTGATCGTATCTATTTAGAATATCGGACTAAA 12770 ||||||||||||||||||||| | ||||||| | ||||||||||||||||| |||||| Sbjct 121 GAATGGCCAGAAAGCCTAGAT-GAAGAGTTGATAGAATCTATTTAGAATATCGCACTAAA 179 Query 12771 GGTGATTTAGGTCTTGAAAAGGAAAGTGTTAAACGTGCGTTATATAAAGCGATTTATATG 12830 ||| || |||||| ||| || |||||||||||||| | ||||||||||||| | |||| Sbjct 180 GGTAATCTAGGTCGTGATAAAGAAAGTGTTAAACGCACACTATATAAAGCGATGTCTATG 239 Query 12831 GGCTTATAGTGGTTCGAATCC 12851 ||||| | ||||||| ||| Sbjct 240 GGCTTGTGAGGGTTCGACTCC 260 >seq125025 Length=589 Score = 219 bits (242), Expect = 1e-52 Identities = 193/238 (81%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 35952 TGTCATTAGATATGTAGGAGGAGAATAATTGGCTGAATTTTGGAGTAATAATGATAGAGG 36011 |||||||||||| |||||||| | ||||| |||||||||||||||||||| || | || Sbjct 236 TGTCATTAGATACGTAGGAGGTGCATAAT-GGCTGAATTTTGGAGTAATAC-GACCGTGG 179 Query 36012 CTATAGAATTAGGATGTGGGTTGACCAAGTCAGTCAAGACAAAGTAGCCAATACAAGTCA 36071 ||| | || | | ||||| ||||| || ||||||| | | |||||||||||| Sbjct 178 ATATCGTATCCGTCTTTGGGTCGACCAGGTTGGTCAAGATATCCAAAACAATACAAGTCA 119 Query 36072 GGTTAGATTTCAATTAGCACTGCTAAATACAACAACTACTTTTGCTCAGTATTCATGTAG 36131 |||||||| | |||||| | |||||||| |||||||| |||||||| ||| |||||| Sbjct 118 AGTTAGATTGCGATTAGCGTTACTAAATACGACAACTACGTTTGCTCAATATCAATGTAG 59 Query 36132 TGCCTATATCGATTTTGAAGGTCAACGTTTGAATTGGTCTGGTTCACCTAGCGTTCTA 36189 ||| ||| |||| ||| | |||||||| |||||||||||||||||||||||||||||| Sbjct 58 TGCTTATGTCGAATTTAACGGTCAACGATTGAATTGGTCTGGTTCACCTAGCGTTCTA 1 >seq125381 Length=275 Score = 212 bits (234), Expect = 2e-50 Identities = 212/274 (77%), Gaps = 1/274 (0%) Strand=Plus/Minus Query 12292 TTGACAAGGTGATTAAAGAGCGTTCTAAACTGTCCTTCTCAACGTTGGATGATATGAGCG 12351 |||| || ||| ||||||||||||| || || || ||||| ||||| |||||||| | Sbjct 273 TTGATAACGTGGTTAAAGAGCGTTCGAA-CTATCACCTTCAACATTGGACGATATGAGTG 215 Query 12352 AGTACCTTACGGAAGGTCTTGTTAACGACTTACAAGAGTATCTATCAGAGCACTATTCTG 12411 |||| |||||| | || || || || ||||||| ||||||||| ||||| ||||||||| Sbjct 214 AGTATCTTACGAACGGCCTAGTGAATGACTTACGAGAGTATCTGGCAGAGAACTATTCTG 155 Query 12412 CTCCACGTTGGTCATGTAAGACAGATAGTGATAAAACTAACGCAGGACTTACCGAGGAAC 12471 | || |||||| |||| ||||| ||||||| ||||||| || || || |||||| Sbjct 154 ACAGAAGTGGGTCATCTAAGCCAGATGCTGATAAAGCTAACGCTGGGCTGACTAAGGAAC 95 Query 12472 TTTTCCTTCAATATCGAAATGAAATCCAAGAGTTAAGAGCAGCACATCCTAACTGCTTTG 12531 |||||| | |||||| |||||| ||||||||||||||||||| |||||| | | Sbjct 94 TTTTCCGAGAGCTTCGAAAGGAAATCGAAGAGTTAAGAGCAGCACACCCTAACCGTAACG 35 Query 12532 CTAACTACATCATGGAAGTAAAAGGATGTTCAAA 12565 | | || | |||||||| |||||||| ||||| Sbjct 34 CAGAATATGTTATGGAAGTGAAAGGATGCTCAAA 1 >seq115959 Length=416 Score = 114 bits (126), Expect = 4e-21 Identities = 80/90 (89%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 1704 TTTTAAATAACACTTTGCTGAATTTTCCTAAATTCATCTTGTATCATCGCTTCGCCCCAA 1763 ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 205 TTTTAAATAACGTTTTGCTGAATTTTCCTAAATTCATCTTGTATCAT-GCTTCGCCCCAA 263 Query 1764 GTAGTGGAAATATTATACTGTGCAGCAAAG 1793 || |||||||||| ||| | ||||||| Sbjct 264 GTCGTGGAAATATCATAACCTTGAGCAAAG 293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137505306598200