Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_004333.2 Length=48247 Score E Sequences producing significant alignments: (Bits) Value seq68430 80.6 8e-11 seq5390 80.6 8e-11 >seq68430 Length=1104 Score = 80.6 bits (88), Expect = 8e-11 Identities = 106/147 (72%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 12774 GTAGTCGTACCAGACGCGAATCTCGCCTTCGCTCGATGCGTTCAAGCCGGTCGGCGTGAT 12833 ||| ||||| | |||||||||||||| || | || || |||| || | || ||||| Sbjct 294 GTAATCGTAGAAAACGCGAATCTCGCCGTCTGTTGAAGCATTCAGCCCATTGGGTGTGAT 235 Query 12834 ACCGAGCAGCTTGATCAGCGGAATGTGCGAGACGGCGCTCATCTGCTCCTGGGCCTGGGC 12893 || || ||||| | |||||||||| || |||| ||| || ||||| | ||| || Sbjct 234 GCCAAGAAGCTTAACCAGCGGAATGCCAGAAACGGATGACATGTGTTCCTGTGACTGCGC 175 Query 12894 CTGCAGTGCGTCGAGCCCGGATAGCGG 12920 ||| | || ||||| || ||||| || Sbjct 174 CTGTAATGTATCGAGGCCAGATAGGGG 148 >seq5390 Length=10783 Score = 80.6 bits (88), Expect = 8e-11 Identities = 75/94 (80%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 17815 GGAGACGTGGCTGAGTGGTCGAAAGCGCTCCCCTGCTAAGGGA--ACGCCTGGAGTAATC 17872 || || ||||| |||||| |||| ||||||||||||||||||| || ||| || Sbjct 4783 GGTGAGGTGGCCGAGTGGCCGAAGGCGCTCCCCTGCTAAGGGAGTACACCT---CAAAAG 4727 Query 17873 TGGGTCGAGGGTTCGAATCCCTCCGTCTCCGCCA 17906 | ||||||||||||||||||||| || |||||| Sbjct 4726 GGTGTCGAGGGTTCGAATCCCTCCCTCACCGCCA 4693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154030097957400