Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq7403 125 1e-23 seq6540 125 1e-23 seq45636 95.1 2e-14 seq66454 93.3 8e-14 seq2157 91.5 3e-13 seq59449 87.8 3e-12 seq3523 84.2 4e-11 >seq7403 Length=2901 Score = 125 bits (138), Expect = 1e-23 Identities = 75/79 (95%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCG 271800 |||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 1002 TGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCG 943 Query 271801 ACTGAGCTATCACGGAATT 271819 ||||||||||| ||||||| Sbjct 942 ACTGAGCTATCGCGGAATT 924 Score = 95.1 bits (104), Expect = 2e-14 Identities = 71/81 (88%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 273267 AAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 273326 || |||||||| || ||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1092 AATATGGTCGGGGTAGGG-GATTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 1034 Query 273327 ACC-AACTGCGCTACACTCCG 273346 ||| |||||||| || ||| Sbjct 1033 ACCGGGCTGCGCTATACCCCG 1013 >seq6540 Length=5298 Score = 125 bits (138), Expect = 1e-23 Identities = 81/89 (91%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 271729 CTCTTTAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCA 271788 || || ||| | |||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 758 CTTTTCAGATTTTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCA 699 Query 271789 CTTGCTCTACCGACTGAGCTATCACGGAA 271817 |||||||||||||||||||||| ||||| Sbjct 698 TTTGCTCTACCGACTGAGCTATCGCGGAA 670 >seq45636 Length=1761 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 273269 AATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTAC 273328 |||||||||||||| |||| ||||||||||||| ||| ||||||| ||| ||||||| Sbjct 1212 AATGGTCGGAGTGGAGAGATTCGAACTCCCGACCCTCTGGTCCCAAACCAGATGCGCTAC 1271 Query 273329 CA-ACTGCGCTACACTCCG 273346 || |||||||||||||||| Sbjct 1272 CAGACTGCGCTACACTCCG 1290 >seq66454 Length=1623 Score = 93.3 bits (102), Expect = 8e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 272867 GTATATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTC 272926 |||| ||||| ||| || ||||| ||||| |||||| ||| ||||||||| |||||||| Sbjct 1209 GTATTTGGTGATCCCTGCTGGACTCGAACCAGCGACCGAGCAATTATGAGTTGCCTGCTC 1268 Query 272927 TAACCAACTGAGCTATAGGCCCTTTTTATTTATT 272960 ||||||||||||||| || || ||| ||||| Sbjct 1269 TAACCAACTGAGCTAAGGGACCAAATTAGTTATT 1302 >seq2157 Length=10186 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 272872 TGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 272931 ||||||||||| ||||| ||||| |||||| ||||||||||| ||||||||||| Sbjct 9522 TGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACC 9581 Query 272932 AACTGAGCTATAGGCCCT 272949 |||||||||||||||||| Sbjct 9582 AACTGAGCTATAGGCCCT 9599 >seq59449 Length=627 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 272872 TGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 272931 ||||||||||| ||||| ||||| |||||| ||||||||||| ||||||||||| Sbjct 89 TGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACC 30 Query 272932 AACTGAGCTATAGGCCCT 272949 ||||||||||||||||| Sbjct 29 GACTGAGCTATAGGCCCT 12 >seq3523 Length=3483 Score = 84.2 bits (92), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 271822 ATGGCGCGCCCAAGGGGACTCGAACCCCTGACCACCCGCGTGACAGGCGGGTATTCTAAC 271881 |||||||| | | ||||||||||||| |||| || ||||||||||| ||||||||||| Sbjct 678 ATGGCGCGGCGGACGGGACTCGAACCCGCGACCCCCGGCGTGACAGGCCGGTATTCTAAC 737 Query 271882 CAACTGAACTA 271892 | ||||||||| Sbjct 738 CGACTGAACTA 748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895479907672000