Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq73449 147 2e-30 seq77134 145 5e-30 seq36896 98.7 7e-16 seq81331 86.0 4e-12 >seq73449 Length=503 Score = 147 bits (162), Expect = 2e-30 Identities = 219/305 (72%), Gaps = 13/305 (4%) Strand=Plus/Plus Query 99267 CGCCCCCACTGGCAGAAATAACCCGTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTC 99326 |||||||| ||||| || | ||||||||| || ||||| | || || ||| || Sbjct 129 CGCCCCCATCGGCAGGAAGAGTCCGTCACCCTGACCGATGAGACGATCCGCGCCGGGCTG 188 Query 99327 GTCCAGGATCACCCGGCTATCGGTGAGGGACGCTGTG----GCGAACGACAGCCGCGAGG 99382 || ||||| || ||| ||||||| ||||| ||||||| || ||||||| Sbjct 189 ATCGAGGATGACGCGGGAGTCGGTGA----CGCTGGTCACCGCGAACGCGAGTCGCGAGG 244 Query 99383 GCACGTTG-CTCTTGATGAGGCCCGTC-ACCACATCCACGGAGGGCCGCTGCGTCGCCAG 99440 |||||||| | |||||| ||||||||| || || || |||||||| ||||| ||||| || Sbjct 245 GCACGTTGGCCCTTGATCAGGCCCGTCGACGACGTCGACGGAGGGACGCTGGGTCGCGAG 304 Query 99441 GACGAGATGAATGCCGGCCG-CACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAA 99499 |||||| || ||| | || | | || || ||| | ||||||||| || | |||| | Sbjct 305 GACGAGGTGGATGGCCGCTGGCTCGGGCGAGCTGGGTGATGCGGACGATCGAGTCCTCGA 364 Query 99500 CCTCTTTCTTGTAGCCACCCATCATGAGATCAGCGAGTTCATCCACCACTACCACGATGT 99559 | || | | || |||||||||||| || ||||| || || || || |||| | || Sbjct 365 CGTCGCGC--GGCGCGACCCATCATGAGGTCGGCGAGCTCGTCGACGACGACCAGCAGGT 422 Query 99560 AGGGG 99564 ||||| Sbjct 423 AGGGG 427 >seq77134 Length=829 Score = 145 bits (160), Expect = 5e-30 Identities = 181/245 (74%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 80312 GTCGATGCAATTCTCACAGACCCGCCCTACGAACTGGGATTCATGGGCAAGAAGTGGGAC 80371 |||||| |||| |||| || ||||| |||| |||| |||||||| | | |||||| Sbjct 471 GTCGATTCAATCGTCACCGATCCGCCATACGGCCTGGCGTTCATGGGTAGGCGCTGGGAC 530 Query 80372 GGCTCGGGCATCGCCTTCGACGTCGAGATGTGGGAGCAATGCCTGCGGGTCCTCAAGCCC 80431 | | | | ||| || |||||| |||| | |||||||| || |||||||| Sbjct 531 TAC---GACGT-GCCAAGCAC--CGAGATTTGGGCTGAGTGCCTGCGCGTGCTCAAGCCT 584 Query 80432 GGTGGGCACCTGCTCGCCTTCGGCGGCTCCCGCACCTGGCACCGGCTGACCGTGGCCATC 80491 || || |||||||| || || | |||| |||||||| |||||| || |||| |||| Sbjct 585 GGCGGCCACCTGCTGGCGTTTGCCGGCACCCGCACCCAGCACCGCATGGCCGTCCGCATC 644 Query 80492 GAGGACGCCGGGTTTGAGATCCGCGACTCGATCGCCTGGCTGTACGGCAGCGGGTTCCCG 80551 |||||||||||||| |||||||||||| |||||||||| | ||||| ||| | || Sbjct 645 GAGGACGCCGGGTTCGAGATCCGCGACATGATCGCCTGGGTTTACGGGTCTGGGATGCCT 704 Query 80552 AAGTC 80556 ||||| Sbjct 705 AAGTC 709 >seq36896 Length=1551 Score = 98.7 bits (108), Expect = 7e-16 Identities = 128/176 (73%), Gaps = 7/176 (4%) Strand=Plus/Minus Query 99394 TTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATG 99453 ||||||||||| || | || || || || || ||||| || ||||| || || || || Sbjct 881 TTGATGAGGCCGGTAATGACGTCAACTGACGGACGCTGGGTTGCCAGAACAAGGTGGATT 822 Query 99454 CCGGCCGCACGCGCCTTCTGCGCGATGCGGACAAT--GTTGGCCTCAACCTCTTTCTTGT 99511 || ||||||||||| ||||| || | || |||| || || || ||||||| Sbjct 821 CCCGCCGCACGCGCTTTCTGTGCAAGACGTGCAATCAGT-----TCTTCCACTTTCTTAC 767 Query 99512 AGCCACCCATCATGAGATCAGCGAGTTCATCCACCACTACCACGATGTAGGGGAGT 99567 | || ||||||| | ||| |||| |||||||||| ||||||||||| || ||| Sbjct 766 CGACAGCCATCATCAAATCGGCGAACTCATCCACCATCACCACGATGTAAGGCAGT 711 >seq81331 Length=977 Score = 86.0 bits (94), Expect = 4e-12 Identities = 123/172 (72%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 99730 TTGGGGTCGATCATGATGAGTTTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAACC 99789 ||||||||||||||||| | | | | || || ||| ||||||||||||||| | Sbjct 482 TTGGGGTCGATCATGATCATGCGGCACTGGTCGGGCGTCAGCCGGTAGAGCAGCGACAGG 541 Query 99790 AGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGC 99849 | ||| |||||| | | ||||||||||| || |||| ||| || || || || ||| Sbjct 542 ATCATGCAGTTGAGGCCGACCGACTTGCCCGACCCCGTCGTGCCCGCGACGAGGAGGTGC 601 Query 99850 GGCATCTTAGCCAGGTTCAGGGAGATGTCCTTGCCCTCGACGTCCTTGCCCA 99901 |||||| |||||| || | || | | |||| ||| || |||||||| Sbjct 602 GGCATCGGCGCCAGG-TCGTGATGACGGGATCGCCCGCGATGTTCTTGCCCA 652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354080015515800