Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_004746.1 Length=36596 Score E Sequences producing significant alignments: (Bits) Value seq115941 149 1e-31 seq30831 114 3e-21 >seq115941 Length=788 Score = 149 bits (164), Expect = 1e-31 Identities = 416/628 (66%), Gaps = 24/628 (4%) Strand=Plus/Plus Query 18859 TTATTAAATACTTGATTAAACGTTATGCGGGAATCATCACTGCAACTAATACATTGCTTA 18918 |||| |||||| || || || ||||| || ||| || | ||||| | |||||| Sbjct 12 TTATCAAATACACTATCAAGCGCTATGCTGGTATCTCAACAGTTACTAACAGCTTGCTTG 71 Query 18919 AAGATACAGCAGAAAATATTCTTGCATGGTTATCAAGCTGGATTGCTAAGAAAGTGGTTG 18978 ||| | || |||||||| ||||| ||| | || |||||||| || ||||| |||| Sbjct 72 CTGATTCTGCTGAAAATATCCTTGCTTGGCTTTCTGATTGGATTGCAAA-AAAGTTGTTG 130 Query 18979 TGACTCGTAACCAAGCGATTATTGCAGCAATGGGTACAGTTCCTAAAAAACCAACAATCG 19038 | ||||||||| |||| || | | ||| || | ||| |||| ||||||||||| | Sbjct 131 TAACTCGTAACAAAGCTATCTTGGAAGCTATCGCTACGCTTCC--AAAAACCAACATTGA 188 Query 19039 CTAACTTTGACGATGTTATT-ACTATGATTAATACATCTGTTGATCCTGCGATTATCGCT 19097 | || | || || | ||| || | | || | ||||| || || |||| Sbjct 189 CAAAATGGGATGACATCATTGACCTTCAAGC-TAAA---GTTGACCCAGCAATTAAGCAA 244 Query 19098 ACTTCAAGTCTT-TTGACTAACCAGTCAGGGTTGAATAAACTTGCTTTGGTTAAAACTGC 19156 || ||| |||| |||||||| ||| || || | | |||| || || | ||| Sbjct 245 ACATCAT-TCTTCTTGACTAATACGTCTGGATTTACTGCACTTAAGAAAGTAAAGAATGC 303 Query 19157 TGAAGGTAAATATTTGCTCGAACCAGACCCAACAAAACCTAATTCATATCTAATTAAAGG 19216 ||| | ||| | | |||| ||| || | ||||| ||| ||| || Sbjct 304 ATTTGGTGATTATCTAATGGAACGTGACGTAA-ATCACCTACAGGCTATTCAATCGCTGG 362 Query 19217 TAAACAAGTTATTGTTGTTGCAGATCGCTGGCTTCCAAATA------GTGGATCAACAGT 19270 ||| | | || || || || |||||| | ||| ||||| ||| Sbjct 363 CTTCGCAGTCAAAGAAGTCGCTGACCGTTGGCTTGCTAATGCATCAGGTGGAGCAATG-- 420 Query 19271 TTATCCACTTTACTATGGAGATATGTCACAAGCTATTACATTGTTTGACCGTGAAAACAT 19330 ||| | || | ||| ||| || |||||| |||| |||||||||||| || | || Sbjct 421 ----CCATTGTATTTTGGTGATTTGAAACAAGCCGTTACTTTGTTTGACCGTCAACAAAT 476 Query 19331 GTCATTACTTCCAACAAATATTGGTGCTGGTGCATTTGAAACTGATACTACTAAAATTCG 19390 |||||| || | || | ||| |||| |||||| ||||||||||| ||||||||| | || Sbjct 477 GTCATTGCTATCTACCA-TATCGGTGGTGGTGCGTTTGAAACTGACACTACTAAAGTACG 535 Query 19391 TGTAATCGATCGCTTCGATGTTAAAGCTACTGACTCAGAAGCTTTAGTTGCTGGTTCATT 19450 ||| || || || || |||||| ||| ||||| ||||||| || || | | |||||| Sbjct 536 TGTTATTGACCGTTTTGATGTTGTAGCAACTGATACAGAAGCGTTTGTACCAGCTTCATT 595 Query 19451 TACTGCAATTGCAGACCAAGTAGGTAAC 19478 || || || || |||||| ||||||| Sbjct 596 TAAAGCCATCGCTGACCAAAAAGGTAAC 623 >seq30831 Length=459 Score = 114 bits (126), Expect = 3e-21 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 32760 TTAAATACCCTAAAGTAGAAGAAGGCTCAACTGCTACTCCATATATGCAATCAGCTAGCG 32819 ||| | | || ||| |||| ||||| || || |||||||| |||| ||||||||||| Sbjct 149 TTAGAAATCCAAAACAAGAACAAGGCGAAATCGCCACTCCATACATGCCATCAGCTAGCG 90 Query 32820 AAGTCACAACTGCTGATTATCCAAGCTACATCGGTCAGTACACAGACTTTGCGCAAGCTG 32879 ||| |||||||||||| |||||||| | |||||| || |||||||||||| | |||| | Sbjct 89 AAGCCACAACTGCTGACTATCCAAGTTTCATCGGACACTACACAGACTTTACACAAGTAG 30 Query 32880 ACAGCACTAATCC 32892 | || |||||| Sbjct 29 ATAGTCTTAATCC 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116804586718800