Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_004775.1 Length=39671 Score E Sequences producing significant alignments: (Bits) Value seq61204 531 1e-146 seq69585 159 9e-35 seq34674 145 2e-30 seq35061 132 1e-26 seq82134 120 8e-23 seq30007 87.8 5e-13 >seq61204 Length=720 Score = 531 bits (588), Expect = 1e-146 Identities = 549/711 (77%), Gaps = 12/711 (2%) Strand=Plus/Minus Query 34028 GCAGCCTACTACAACGAAATCGACCAATTTGCAGCTCAATGGCTGCGTAACCTGATCGCC 34087 || |||||||||||||| ||||||| | ||| || |||||||| | ||| || || Sbjct 710 GCCGCCTACTACAACGAGATCGACCCGTATGCGGCCGCGTGGCTGCGCACCCTAATTTCC 651 Query 34088 GGCGGTCATATCGCGCCAGGCGAAGTTGACGAAAGGAGTATTGAAGATGTCACACCTGAC 34147 | || || || ||||| ||||| || ||||| ||| ||| ||||| ||| || Sbjct 650 GCGGGGCACATAGCGCCTGGCGACGTAGACGAGAGGGACATTCGCGATGTTCGACCAAAC 591 Query 34148 GACCTGCGAGGTTTT-ACGCAGTGCCACTTCTTCGCCGGAATTGGCGTCTGGTCTCATTC 34206 ||||| | || | || || ||||| ||||||||||| || || || ||||| | | Sbjct 590 GACCT-CAAGCCCTACACCCAATGCCATTTCTTCGCCGGCATCGGGGTGTGGTCCTACGC 532 Query 34207 CCTGCGCCTCGCCGGATGGCCAGATGATAAAACAGTCTGGACCGGCTCCTGCCCGTGCCA 34266 || |||| ||||| |||||||||||| | | || |||||||| ||||| || ||||| Sbjct 531 TCTTCGCCGTGCCGGCTGGCCAGATGATCGACCTGTTTGGACCGGTTCCTGTCCTTGCCA 472 Query 34267 GCCTTTCAGCGCGGCAGGCAAAGGAGATGGGTTTGCTGACGAGCGGCACCTTTGGCCA-C 34325 |||||| | ||||||| |||| |||||||| ||||||||||||||| |||||| | Sbjct 471 ACCTTTCTCCCAGGCAGGCGCGGGAGCTGGGTTTGATGACGAGCGGCACCTATGGCCAGC 412 Query 34326 ACTTCTTCCAC---CTCATCAGCGAGCGCAGACCTCAGCATGTCTTTGGCGAACAGGTTG 34382 | ||||| ||||| || ||| |||||||| || ||||||||||| |||| Sbjct 411 A----TTCCAGTGGCTCATTGAAAAGTGCAAGCCTCAGCACGTATTTGGCGAACAAGTTG 356 Query 34383 CAGCAGGTAACGCAAACACATGGTTCGACCTTGTACAAGCAGACCTGGAAGGAGTGGGAT 34442 |||||||||||||||| | |||||||||||||||||| |||| ||||||||| |||||| Sbjct 355 CAGCAGGTAACGCAAATTCTTGGTTCGACCTTGTACAAACAGATCTGGAAGGAATGGGAT 296 Query 34443 ACACCTTCGGGCTTGTGCCGTTCACGTCAGCGGGCATCGGTGCGCCGCACATCAGAGAGC 34502 || |||| ||| || |||||||||| ||||| || ||||||||||||| ||||| |||| Sbjct 295 ACGCCTTTGGGATTACGCCGTTCACGGCAGCGAGCGTCGGTGCGCCGCATATCAGGGAGC 236 Query 34503 GAGCTTACTGGGTGGCCCACGCC-AGTAGCAAACACGAATCCTCAGCCGGAAACGAAACG 34561 ||||||||||| ||||| || || | | |||| | ||| || ||||| ||||| | | | Sbjct 235 GAGCTTACTGGCTGGCCTACTCCGACTTGCAA-CGTGAACCCACAGCCAGAAACAAGAAG 177 Query 34562 GGGGTTGCAACACGTCTCCGGAGCAGCTCGACTGACGGGCTGGCAGACACCAGTGGCGAA 34621 ||| || || | |||||||||||||| || | ||||| |||||||| || |||||||| Sbjct 176 GGGATTACAGAATGTCTCCGGAGCAGCAAGATTAACGGGATGGCAGACGCCGGTGGCGAA 117 Query 34622 CGACTCAACCGGATCGACTCATTGCTACAGCGGGAAGAATCAGGACGGGTCACCGAAGGT 34681 ||| || || ||||| || ||||| |||||||||||||| | |||||| || || ||| | Sbjct 116 CGATTCGACTGGATCTACCCATTGTTACAGCGGGAAGAAGCCGGACGGATCGCCAAAGAT 57 Query 34682 GTGCTTGAAGTTGCCGGGTACAGCGCTTCTGGCGGGATGGGTAACGCCGAC 34732 ||| | ||| | ||||| || || ||||||||||| ||||| |||||||| Sbjct 56 TTGCCTCAAGCTACCGGGCACTGCACTTCTGGCGGGCTGGGTGACGCCGAC 6 >seq69585 Length=1445 Score = 159 bits (176), Expect = 9e-35 Identities = 182/242 (75%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 289 TGCTGATTACGTGTTGCTTCGCCTGGTGGAAATAGACCAGATGGATGTGATCGACATCCT 348 ||| ||||| ||| || ||| || | ||||| ||||||||||| || |||||||| | Sbjct 1342 TGCAGATTATGTGCTGAAGCGCTTGTTTGAAATTGACCAGATGGACGTACTCGACATCAT 1283 Query 349 TAACGATGACATGAGTATCAAGCCGGTTTCCGAATGGCCTAAGGTC-TGGCGTCAGTATC 407 | |||||||||||| || ||||| ||||| || ||||| || || |||||||| || | Sbjct 1282 GACCGATGACATGAGCATTAAGCCTGTTTCGGATTGGCC-AACCTCATGGCGTCAATACC 1224 Query 408 TTACCGGTTTCGAGCTGGCCGACATGTTCGAAGGCCGCGGCGACGAGAAAGAACTTGTTG 467 | | ||| ||||| ||||| || ||||| ||||| || ||||| ||| || | || | Sbjct 1223 TGAGCGGATTCGATCTGGCTGAGATGTTTGAAGGTCGGGGCGAAGAGCGTGAGATGGTCG 1164 Query 468 GCATACTCaaaaaaaTAAAATGGCCTGACAAGGTGAAGAACCTCGAGCTTATTGGTAAGC 527 |||| || ||||| || || ||||| ||||| || | || ||||| || |||| || | Sbjct 1163 GCATCCTGAAAAAGATTAAGTGGCCGGACAAAGTCAGAAATCTCGAACTGCTTGGCAAAC 1104 Query 528 AC 529 || Sbjct 1103 AC 1102 >seq34674 Length=2745 Score = 145 bits (160), Expect = 2e-30 Identities = 229/328 (70%), Gaps = 0/328 (0%) Strand=Plus/Plus Query 39277 TGGCTAAATCCCCAGCAGAGCGCAAAGCAGCGCAGCGTGCGCGGCAGTACGCCGCCGGTG 39336 || |||||||||| || || |||||||||| |||||| | | ||| ||| || |||| Sbjct 1727 TGCCTAAATCCCCCGCCGAACGCAAAGCAGAGCAGCGAGACAGACAGGCCGCTGCAGGTG 1786 Query 39337 AGCGCAAGCTTGAGCTGGTACTGGATGGGCAGGAACTGGAAATGCTGGCGCGGAACTGCA 39396 | ||| | ||| | || || |||| ||||||||||| ||||||| || ||| |||| Sbjct 1787 TCAGAAAGGTGGAGATTGTTCTTGATGAGCAGGAACTGGCGATGCTGGAGCAGAATTGCA 1846 Query 39397 CAGCCCGTCGCCATGGTCGTGCGCCGTATGACATGAGCGAGTACATCGCGTTGCTGATCC 39456 | || || | || ||||| || || ||| || ||||| ||||| |||| || | Sbjct 1847 CCTTACGCCGTCCAGGGCGTGCCCCCTACGACCTGGCAGAGTATATCGCTCTGCTTATTC 1906 Query 39457 GCCAGGATGATGCCCGCGTTCGTGGCCGTATCAAATCCATCAGCGCGAACCGATGCGGGA 39516 ||||||| ||||| || || ||| |||| ||||||| || || | | ||||| | Sbjct 1907 GCCAGGACGATGCGCGGGTCCGTAGCCGGTTCAAATCGATGAGTAAGCGCAAGTGCGGTA 1966 Query 39517 AATGTGGCGATTCACTGCCGGTTAAGTCGTGTCCGTGCGATGGTGATTCGGCATGTTGGG 39576 | ||||| |||| ||||| || | || || | | || || || ||||||| Sbjct 1967 AGTGTGGTGATTGCCTGCCTGTGCAAGATTGCCCACTGAAAGAAGAGTCAGCCTGTTGGG 2026 Query 39577 TAACCCGTGGATGGCATGAAACTAAATT 39604 | || ||| ||||||||||| || || Sbjct 2027 TCCGCCTTGGCTGGCATGAAACGAAGTT 2054 >seq35061 Length=1748 Score = 132 bits (146), Expect = 1e-26 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 2188 TCGCTCAGTTTCTGCTTCAGCAGATAGCCTTCCAGCATCCAGATTTTATTCACCGCATTT 2247 ||||| ||||| ||||||||||| |||||||| || |||||||||| | || ||||| Sbjct 1502 TCGCTAAGTTTTTGCTTCAGCAGGTAGCCTTCAAGTTGCCAGATTTTACTAACGGCATTG 1561 Query 2248 TCGCGAGCAATCTTGCGGCCAATTTCAGCGTCGAAATTTTCCGGACTGGCACAGGCGCTT 2307 | || || || | || || ||||| ||||| || |||||||| ||||| ||||||||| Sbjct 1562 GCACGGGCGATGCTACGACCTATTTCTGCGTCAAAGTTTTCCGGGCTGGCGCAGGCGCTT 1621 Query 2308 TCTCCGGTGACTGTAAATCCGTT 2330 || |||||||| || |||||||| Sbjct 1622 TCACCGGTGACGGTGAATCCGTT 1644 >seq82134 Length=394 Score = 120 bits (132), Expect = 8e-23 Identities = 185/254 (73%), Gaps = 14/254 (6%) Strand=Plus/Minus Query 1210 GTGTGGGAAGTAGCAGAAGGCGCGCTGACGGACGAAGACACCGAAATCATCTGG-GTGGC 1268 ||||||||||| || |||||||| |||| |||||| |||| ||||||||| | | Sbjct 380 GTGTGGGAAGTGGCTGAAGGCGC-ATGACAGACGAAAACACGATCATCATCTGGATTCGT 322 Query 1269 GTTCGGTAACCCGACGC-GTAACACCGGGCGTTTCCGTGAATGTTTCCGCAAGTACAAAC 1327 |||||| ||||| || | | ||||| || || ||||| || || || ||||| || | Sbjct 321 GTTCGGCAACCCCACACAGGAACACAGGCCGATTCCGCGAGTGCTTTCGCAA----AATC 266 Query 1328 AC---CGCTGGA-AGTGCGCGCAGATTGACAGCCGCACCGTTGAAGGCACTAACAAGCAG 1383 | ||||||| | ||| ||| || ||||| || || || ||||| |||||| || Sbjct 265 GCAGGCGCTGGATACAGCG-GCAAATCGACAGTCGGACGGTGCCTGGCACGAACAAGAAG 207 Query 1384 CAGTTGCAGAAGTGGGTAGACGACTACGGCGAGGAAAGCGACTTTGTTAAAGTTCGTGTG 1443 || | | ||||||| ||||||| ||||| || ||||| |||| ||| || || ||| Sbjct 206 AAGCTCGACGAGTGGGTTAACGACTATGGCGAAGACAGCGA-TTTG-TAAGGTGCGAGTG 149 Query 1444 CGCGGAATATTCCC 1457 ||||| || || || Sbjct 148 CGCGGCATGTTTCC 135 >seq30007 Length=31646 Score = 87.8 bits (96), Expect = 5e-13 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 34949 GGTTTTTGGCGAGATGCGGACTGGCTCTTTTGTCGAGATGGCAAATGGCGTCCAGTTGAA 35008 || || ||| |||||| ||||||||| || || ||||| || | || ||||||||| Sbjct 3231 GGCTTCTGGTCAGATGCTGACTGGCTCGGATGCCGGGATGGAAAGTTACGGCCAGTTGAA 3290 Query 35009 CCCGGCACATTCCCGCTGGTTGATGGGGCTGCCGCGCGCCTGGGACGA 35056 ||||||||||||||||||| | ||||| | |||| | |||||||| Sbjct 3291 CCCGGCACATTCCCGCTGGCTCATGGGATTCCCGCCAGAGTGGGACGA 3338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126629361163800