Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_004913.3 Length=59866 Score E Sequences producing significant alignments: (Bits) Value seq43257 123 1e-23 seq47236 109 2e-19 seq44976 89.7 2e-13 seq64133 82.4 3e-11 >seq43257 Length=1618 Score = 123 bits (136), Expect = 1e-23 Identities = 186/263 (71%), Gaps = 1/263 (0%) Strand=Plus/Minus Query 56161 GCATGGGTGGAGAAAAACATCAAAGTGCCGCTGACCGAACCCCAGAAAGCGGGGATCGCG 56220 || ||||| || |||| | | | || || ||||||||||| ||||| | || || ||| Sbjct 873 GCCTGGGTAGATAAAA-CGTACACGTTCCACTGACCGAACCGCAGAAGGTTGGCATAGCG 815 Query 56221 TCATTCTGTCCGTACAACATTGGTCCCGGTAAGTGTTTCCCGTCGACGTTTTACAGACGA 56280 ||||||||||||| |||||||| |||||||| || | || || ||||| ||| | | Sbjct 814 TCATTCTGTCCGTGGAACATTGGCCCCGGTAAATGCCTGCCATCAACGTTCTACCGGAAA 755 Query 56281 ATTAATGCAGGTGATCGAAAAGGTGCCTGCGAAGCTATTCGCTGGTGGATTAAGGACGGT 56340 | || ||||| ||||| ||||| || | || || | ||||| ||||| Sbjct 754 CTAAACGCAGGCGATCGCCTGGGTGCATGTGCAGAGATAAAGCGCTGGATATTCGACGGC 695 Query 56341 GGCAGAGACTGCCGTATTCGTTCAAACAACTGTTACGGTCAGGTATCCCGTCGTGACCAG 56400 || | ||| ||||| ||||| || || ||||||||| || || ||| ||||||||| Sbjct 694 GGGAAAGATTGCCGCATTCGCTCTAATGGCTGTTACGGGCAAGTTATCCGCCGTGACCAG 635 Query 56401 GAGAGCGCGCTGGCGTGCTGGGG 56423 || | ||| | |||||||| Sbjct 634 GAATCAGAGCTCACATGCTGGGG 612 >seq47236 Length=1665 Score = 109 bits (120), Expect = 2e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 57529 AAAGCGCAGCGCGATAAAAAAGCCAGAGAGCTGGAACAGGCGAATGCCACCATTACTGAC 57588 ||| ||||||| ||||| | | || ||| | ||| || ||||| |||| |||| Sbjct 744 AAATCGCAGCGGGATAAGGCCTCTGGCGAACTGAAGTTGGCAAACGCCACGATTAATGAC 685 Query 57589 ATGCAGGTGCGCCAGCGTGATGTTGCTGCGCTCGATGCAAAATACTCGAGGGAGTTAGCC 57648 |||||||| || ||||| || |||||||| |||||||| ||||| | | ||||||||| Sbjct 684 ATGCAGGTACGTCAGCGAGACGTTGCTGCCCTCGATGCGAAATATACCAAGGAGTTAGCT 625 Query 57649 GATGCGAGAGCTGAAAATGAAACTCTGCGTGCTGATGTTGCCGCTGGT 57696 ||||||| |||||||||| | || || ||| | | || |||||| Sbjct 624 GATGCGAACACTGAAAATGACAGGCTTCGCGCTAAGCTGGCTGCTGGT 577 >seq44976 Length=557 Score = 89.7 bits (98), Expect = 2e-13 Identities = 134/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 48081 CCGGAAGACTGGAAAGACCTGTTCACTGCCCT-GTGGCTTAAGACCAAAAAACTGGAGCA 48139 || || |||||||||||||| |||||||||| || || ||||||||||| |||| Sbjct 218 CCTGACGACTGGAAAGACCTCATCACTGCCCTCGTAGCA-AAGACCAAAAACGAACAGCA 160 Query 48140 ACGAAGTGTGCCTGGTATCGACGGTGGCGTTGTCATGCTTGGCGTGCGTACCAGCAAAAT 48199 || | | || ||||||| ||| ||||| |||||| | || ||| || |||||||| Sbjct 159 GCGCACCGCACCCGGTATCGGCGGAGGCGTGGTCATGTTCGGATCGCGGACAAGCAAAAT 100 Query 48200 GC-GGAAGGCCAGCATGACTGAGCTTATCGAAATCATGTTCTGGTTCGGCTCAGAGCGCA 48258 || || | || | ||| ||| ||||||| || | |||||| ||| | |||| | Sbjct 99 GCGGGTAAGCGA-AATGGTTGAAGTTATCGAGGCAATTTACTGGTTTGGCACTGAGCAAA 41 Query 48259 ACGTG 48263 ||||| Sbjct 40 ACGTG 36 >seq64133 Length=746 Score = 82.4 bits (90), Expect = 3e-11 Identities = 164/237 (69%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 57597 GCGCCAGCGTGATGTTGCTGCGCTCGATGCAAAATACTCGAGGGAGTTAGCCGATGCG-- 57654 |||||||| | |||||| | | ||||| |||||| ||| ||| || ||||||||| Sbjct 430 GCGCCAGCTTTCGGTTGCTTCCATTGATGCCAAATACACGAAGGA-TTGGCCGATGCGCA 372 Query 57655 AGAGCTGAAAATGAAACTCTGCGTGCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGATC 57714 | | | | || ||||||| ||||| | |||| |||||||||||| || Sbjct 371 AAAACCATTAGCGA---TCTGCGTAGGGATGTCGATTCTGGGGCTAAGCGCCTGCGCGTC 315 Query 57715 AACGCCACCTGC--TCCGGTACCGTGCG-TGAAGCCACCGGCACCTCCGGCGTGGATAAT 57771 |||| || || | | || || | || || ||| |||| |||||||| || Sbjct 314 TCAGCCAAATGTGTTCGGCCAGTGTCCGGTAAATCCTCCGCCACCC---GCGTGGATGAT 258 Query 57772 GCAACCGGCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCATCCTCAGAGAG 57828 | | |||||||||| ||||| ||||| | ||||||||||||| |||||||||| Sbjct 257 GATGGCAGCCCCCGACTTACAGACGCCGCTCAGCGGGATTATTTCACCCTCAGAGAG 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191153367640800