Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_004914.3 Length=62706 Score E Sequences producing significant alignments: (Bits) Value seq101427 125 3e-24 seq43257 123 1e-23 seq47236 109 2e-19 seq44976 89.7 2e-13 seq64133 82.4 3e-11 >seq101427 Length=713 Score = 125 bits (138), Expect = 3e-24 Identities = 414/623 (66%), Gaps = 22/623 (4%) Strand=Plus/Plus Query 56672 TGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATAAACGCCACATAGAC 56731 |||| ||||||| || |||||| | ||| |||||||| |||| |||||||||||||| Sbjct 27 TGAGGCCCGCCAGCCGACGATGCGCCGGGCGAACACATCGATGACGAACGCCACATAGAC 86 Query 56732 GAAG-CCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTT 56790 |||| || ||| || ||||| || || || ||||||| | || || Sbjct 87 GAAGTCCGACCCACGTCGCCACGTAGGTGAAGTCGCTGACCCACAAAGCATTCGGCCGGG 146 Query 56791 CTGCCACGAACTGACGGTTTACGCGGTCGCCTG--CGGCAACGG-CTTTCCGGCTGATGG 56847 ||| |||||||||||| ||||||||| | ||| ||| | |||| ||| | Sbjct 147 GAGCCTTGAACTGACGGTTGACGCGGTCGAGAGGCAGGCCGCGGCCGGATCGGC-GATCG 205 Query 56848 TCGTACGGACCTTTTTACCCCGGAGAACACCGGCAAGTCCCATAACCGCCATGAGACGTG 56907 | || || || | | || || | || ||| |||| || || || ||| || || | Sbjct 206 TGGTGCGCACGGTCCTGCCACGCACCACCCCGCCAAGCCCAATCGGCG-CATCAGCCGCG 264 Query 56908 CCACTGTACATCTGGCCACCCTGATTCCTTCCCGTAACAA-CTGACGCCAGACTTTACGC 56966 |||| || |||| || || ||| || ||||| || || |||||||| || ||| Sbjct 265 CCACCGTGCATCGAGCGGCCACGATCCCCTCCCGCGCTAAGTTGCCGCCAGACCTTCCGC 324 Query 56967 ACACCGT--ACACCTGATGATTTTCATCGTATACGCGCTGTATCTCTCTCTTCAGCCAGT 57024 || |||| || || || | || | ||| | || |||| |||||| || ||| | | Sbjct 325 ACGCCGTAGACGCCAGAAG-TTGGCCTCGAACACACGCTTTATCTCGATCATCAACGCGG 383 Query 57025 CGTCG-TGCTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGCTGACAATG- 57082 ||||| ||| ||||||| | | || || |||| ||| | || | ||| Sbjct 384 CGTCGCTGC-GCGCACGAACCGGTTGCTTCTCAGGATCGGCACGCCG-GGCGG--CATGC 439 Query 57083 --GTAATACGTTGAC-GGGGCAATATGCAGTTCGCTGCATACCGGTCCGACCCCGTACTG 57139 ||| || || ||| ||||| || |||| | ||||| | ||| |||||||||| Sbjct 440 ACGTAGTAGGTCGACGGGGGCGATCGGCAGCACCCTGCAGATCGGCTCGACCCCGTAGAC 499 Query 57140 CTCACGCAGCTTATCCA-GCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCCTT 57198 ||| || | | || | | || | ||||| | | ||| ||||| ||||||| | Sbjct 500 CTCCCGATGATCGTCGATGAAGCTG-ATCATGGCCGCGACCGGC-GTCGAGCTCCGCCAT 557 Query 57199 CGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGATTTTC 57258 || ||||| || || |||| ||| ||||| ||||| ||||||| ||||| || || Sbjct 558 GGCGAAATACGCCGACGCCTTGCGCAGGATCTCGTTGGCTTGGCGCAGCTCACGGTTCTC 617 Query 57259 ACGTTCCAGCTCTTTCAGACGCT 57281 |||||| ||| | || | |||| Sbjct 618 ACGTTCAAGCGCCTTGATCCGCT 640 >seq43257 Length=1618 Score = 123 bits (136), Expect = 1e-23 Identities = 186/263 (71%), Gaps = 1/263 (0%) Strand=Plus/Minus Query 59001 GCATGGGTGGAGAAAAACATCAAAGTGCCGCTGACCGAACCCCAGAAAGCGGGGATCGCG 59060 || ||||| || |||| | | | || || ||||||||||| ||||| | || || ||| Sbjct 873 GCCTGGGTAGATAAAA-CGTACACGTTCCACTGACCGAACCGCAGAAGGTTGGCATAGCG 815 Query 59061 TCATTCTGTCCGTACAACATTGGTCCCGGTAAGTGTTTCCCGTCGACGTTTTACAGACGA 59120 ||||||||||||| |||||||| |||||||| || | || || ||||| ||| | | Sbjct 814 TCATTCTGTCCGTGGAACATTGGCCCCGGTAAATGCCTGCCATCAACGTTCTACCGGAAA 755 Query 59121 ATTAATGCAGGTGATCGAAAAGGTGCCTGCGAAGCTATTCGCTGGTGGATTAAGGACGGT 59180 | || ||||| ||||| ||||| || | || || | ||||| ||||| Sbjct 754 CTAAACGCAGGCGATCGCCTGGGTGCATGTGCAGAGATAAAGCGCTGGATATTCGACGGC 695 Query 59181 GGCAGAGACTGCCGTATTCGTTCAAACAACTGTTACGGTCAGGTATCCCGTCGTGACCAG 59240 || | ||| ||||| ||||| || || ||||||||| || || ||| ||||||||| Sbjct 694 GGGAAAGATTGCCGCATTCGCTCTAATGGCTGTTACGGGCAAGTTATCCGCCGTGACCAG 635 Query 59241 GAGAGCGCGCTGGCGTGCTGGGG 59263 || | ||| | |||||||| Sbjct 634 GAATCAGAGCTCACATGCTGGGG 612 >seq47236 Length=1665 Score = 109 bits (120), Expect = 2e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 60369 AAAGCGCAGCGCGATAAAAAAGCCAGAGAGCTGGAACAGGCGAATGCCACCATTACTGAC 60428 ||| ||||||| ||||| | | || ||| | ||| || ||||| |||| |||| Sbjct 744 AAATCGCAGCGGGATAAGGCCTCTGGCGAACTGAAGTTGGCAAACGCCACGATTAATGAC 685 Query 60429 ATGCAGGTGCGCCAGCGTGATGTTGCTGCGCTCGATGCAAAATACTCGAGGGAGTTAGCC 60488 |||||||| || ||||| || |||||||| |||||||| ||||| | | ||||||||| Sbjct 684 ATGCAGGTACGTCAGCGAGACGTTGCTGCCCTCGATGCGAAATATACCAAGGAGTTAGCT 625 Query 60489 GATGCGAGAGCTGAAAATGAAACTCTGCGTGCTGATGTTGCCGCTGGT 60536 ||||||| |||||||||| | || || ||| | | || |||||| Sbjct 624 GATGCGAACACTGAAAATGACAGGCTTCGCGCTAAGCTGGCTGCTGGT 577 >seq44976 Length=557 Score = 89.7 bits (98), Expect = 2e-13 Identities = 134/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 48080 CCGGAAGACTGGAAAGACCTGTTCACTGCCCT-GTGGCTTAAGACCAAAAAACTGGAGCA 48138 || || |||||||||||||| |||||||||| || || ||||||||||| |||| Sbjct 218 CCTGACGACTGGAAAGACCTCATCACTGCCCTCGTAGCA-AAGACCAAAAACGAACAGCA 160 Query 48139 ACGAAGTGTGCCTGGTATCGACGGTGGCGTTGTCATGCTTGGCGTGCGTACCAGCAAAAT 48198 || | | || ||||||| ||| ||||| |||||| | || ||| || |||||||| Sbjct 159 GCGCACCGCACCCGGTATCGGCGGAGGCGTGGTCATGTTCGGATCGCGGACAAGCAAAAT 100 Query 48199 GC-GGAAGGCCAGCATGACTGAGCTTATCGAAATCATGTTCTGGTTCGGCTCAGAGCGCA 48257 || || | || | ||| ||| ||||||| || | |||||| ||| | |||| | Sbjct 99 GCGGGTAAGCGA-AATGGTTGAAGTTATCGAGGCAATTTACTGGTTTGGCACTGAGCAAA 41 Query 48258 ACGTG 48262 ||||| Sbjct 40 ACGTG 36 >seq64133 Length=746 Score = 82.4 bits (90), Expect = 3e-11 Identities = 164/237 (69%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 60437 GCGCCAGCGTGATGTTGCTGCGCTCGATGCAAAATACTCGAGGGAGTTAGCCGATGCG-- 60494 |||||||| | |||||| | | ||||| |||||| ||| ||| || ||||||||| Sbjct 430 GCGCCAGCTTTCGGTTGCTTCCATTGATGCCAAATACACGAAGGA-TTGGCCGATGCGCA 372 Query 60495 AGAGCTGAAAATGAAACTCTGCGTGCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGATC 60554 | | | | || ||||||| ||||| | |||| |||||||||||| || Sbjct 371 AAAACCATTAGCGA---TCTGCGTAGGGATGTCGATTCTGGGGCTAAGCGCCTGCGCGTC 315 Query 60555 AACGCCACCTGC--TCCGGTACCGTGCG-TGAAGCCACCGGCACCTCCGGCGTGGATAAT 60611 |||| || || | | || || | || || ||| |||| |||||||| || Sbjct 314 TCAGCCAAATGTGTTCGGCCAGTGTCCGGTAAATCCTCCGCCACCC---GCGTGGATGAT 258 Query 60612 GCAACCGGCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCATCCTCAGAGAG 60668 | | |||||||||| ||||| ||||| | ||||||||||||| |||||||||| Sbjct 257 GATGGCAGCCCCCGACTTACAGACGCCGCTCAGCGGGATTATTTCACCCTCAGAGAG 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200215945106100