Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_004928.1 Length=167560 Score E Sequences producing significant alignments: (Bits) Value seq33108 178 1e-39 seq49372 120 3e-22 seq49234 120 3e-22 seq31280 113 5e-20 seq50823 109 6e-19 seq72596 98.7 1e-15 seq34305 96.9 4e-15 >seq33108 Length=3479 Score = 178 bits (196), Expect = 1e-39 Identities = 149/183 (81%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 62063 TTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 62122 ||||| ||| || ||||||||||| || || ||||| ||||| ||||| || ||||| || Sbjct 2968 TTATAAACTTTCCGTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGA 2909 Query 62123 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 62182 |||||||| || ||||| ||||| ||||| ||||||||||||||||| || || ||||| Sbjct 2908 ATTAAAGCGCACGGCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATG 2849 Query 62183 CTTAACTGCATCTTCCAGAGTTTCGCGACGCAGAATGTTAACGTTCAGGTGTTGACCACC 62242 || || || |||||||| ||||| || ||||| | ||||||||| | ||| || || || Sbjct 2848 TTTCACGGCGTCTTCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCC 2789 Query 62243 TTC 62245 ||| Sbjct 2788 TTC 2786 >seq49372 Length=1062 Score = 120 bits (132), Expect = 3e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 67986 TTTTGTTTGAAACGTTTGACGTAATCGTCATGTCCTAAACTTTGGTACATACTTACTACT 68045 |||| |||||||||||| | ||||| || | || || | | |||||| | |||||| Sbjct 280 TTTTCTTTGAAACGTTTAATATAATCATCTTCGCCAAATTTACGATACATATTAACTACT 339 Query 68046 TTGCTGTAGTTTTCCCAGGCATACTCACGGAACCAACCAGAGGTGATGCTTGTACAGACT 68105 | | | || ||||| | | | || | ||||| || || || || || |||| ||| Sbjct 340 GTATTAAAATTCTCCCAAGAAAATTCTCTAAACCATCCTGACGTAATACTACTACACACT 399 Query 68106 TTTTCCAATGCCATCATAAAACTGGCTTCAGGGTTAATTTTAAAGTCATTAGGAATTTGA 68165 || | || || | |||||||| ||| | ||||| ||| | |||||| ||||| Sbjct 400 TTAACTAAAGCAGTAATAAAACTCTGACGAGGATCAATTTCAAAATTATTAGGGATTTGT 459 Query 68166 GAACGTTCTAATGCTAGTACACATGATTCTTCGTATACACC 68206 |||||||||||||| || ||||||| |||||| |||||||| Sbjct 460 GAACGTTCTAATGCAAGAACACATGTTTCTTCATATACACC 500 >seq49234 Length=879 Score = 120 bits (132), Expect = 3e-22 Identities = 133/176 (76%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 64688 AATGTTACGTGACCTGTGCCTAAGATAAATGTTGGAGAGATTTTAAAATCCTTTACACGT 64747 ||||| || |||||||| ||||| || | || | | |||||||||||| || | ||| Sbjct 375 AATGTAACATGACCTGTACCTAA-ATGTAGGTAGTACTGATTTTAAAATCATTGATTCGT 433 Query 64748 TTACCGTTTTGAACATGTTTACGGACTGCACCAAATACGCGTGGTAATTCACGATACTCA 64807 ||||| ||| || || ||||| || ||||| ||||| ||||| |||||||| || ||| Sbjct 434 TTACCAGCTTGTACGTGCTTACGAACAGCACCGAATACACGTGGCAATTCACGGTATTCA 493 Query 64808 GCCATAAGATGTTGGTCGGTCAGTTCAGAAACAAGTGTTAAATTGATACGAGTCAT 64863 ||||||||||||||||| | | ||| || || | ||||||||| ||||| Sbjct 494 GCCATAAGATGTTGGTCAGCTAATTCTTGTACTGGTACGAGATTGATACGGGTCAT 549 >seq31280 Length=10079 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142195 CCGTAGTCCATATGTCGAATACGGTTTTCATCCACGCCTTTGTTATTTTTCAGAACTAAT 142254 ||||||||||| || || | ||||| | ||||| || ||| |||||||| ||||| Sbjct 1354 CCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTTTTCAGGACTAAC 1413 Query 142255 AGGTTCTCTACTTCTAAGTGCCACATTGGATAATACGCTGTAGCAGCACCACCACGAATA 142314 ||| | |||||||| | |||||||| ||||| || || || || || ||||| | Sbjct 1414 AGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGCGTCGCTGCGCCGCCACGGACG 1473 Query 142315 CCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCC 142374 || || || ||||| ||||| || || || ||||| || || |||| || ||| ||| Sbjct 1474 CCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAACGGGATACAACCG 1533 Query 142375 GTATGTCGAACTTCACC 142391 ||||| | ||||||| Sbjct 1534 GTATGGAAAGCTTCACC 1550 >seq50823 Length=3276 Score = 109 bits (120), Expect = 6e-19 Identities = 134/182 (74%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 64682 TAAAAGAATGTTACGTGACCTGTGCCTAAGATAAATGTTGGAGAGATTTTAAAATCCTTT 64741 ||||| || || || || ||||| || | ||| | || | ||||||||||| || Sbjct 128 TAAAAAAAGGTAACATGTCCTGTTCCAAGAATATAGCTTTTACTTATTTTAAAATCATTA 187 Query 64742 ACACGTTTACCGTTTTGAACATGTTTACGGACTGCACCAAATACGCGTGGTAATTCACGA 64801 | | ||| || | ||| ||||| | |||||||||||||| ||||||||||||||| Sbjct 188 ATAT-TTTCCCAGCATCAACGTGTTTCCTTACTGCACCAAATACACGTGGTAATTCACGA 246 Query 64802 TACTCAGCCATAAGATGTTGGTCGGTCAGTTCAGAAACAAGTGTTAAATTGATACGAGTC 64861 || |||||||| |||||||| |||| || ||| ||| | |||||| || |||||| Sbjct 247 TATTCAGCCATCAGATGTTGATCGGCCAATTCCTGAACCGGAACTAAATTTATCCGAGTC 306 Query 64862 AT 64863 || Sbjct 307 AT 308 >seq72596 Length=790 Score = 98.7 bits (108), Expect = 1e-15 Identities = 178/257 (69%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 46321 ACGCCAAGATTATTGCGTCCATCAAGAATTTCATTGCCAGTTGAATCTTTCCATATGCTC 46380 || |||| |||| | ||||| | ||||||| ||| || |||||||||| || Sbjct 774 ACACCAATATTAAATCTACCATCGAATTTTTCATTTCCATTTTCATCTTTCCATGAACT- 716 Query 46381 AAGAAACTACGGCAACCCATTGGAGAAACAGGAACTGA---AGAACCGGTAATAGCTTTA 46437 |||||| ||| |||||||||||| ||| |||| ||| |||| || | |||| Sbjct 715 AAGAAAGAACGACAACCCATTGGACTAACTGGAATTGATTCAGAATGCGTCA---CTTTT 659 Query 46438 TTATTC---TTAACCGAAATAATGTCAGGATACATTCTTTTGCTTGCGCACTCTAACGCA 46494 |||||| | ||||| || | || ||||| |||||||| ||| | | || Sbjct 658 TTATTCAAGTCTACCGATATGAAATCTGGATATATTCTTTTAGATGCAGTTTTAATTGCT 599 Query 46495 AGTTGTTTAATATCATAGTTCGGATCATCTTTATAAAGATTAACACCTTCTTCAACAAAC 46554 ||| ||| | |||||| || ||||||| || | |||||| ||||| |||| || ||| Sbjct 598 TGTTCTTTTAAATCATAATTAGGATCATTTTCTTTAAGATTTACACCATCTTTAAGAAAG 539 Query 46555 ATAACAAGTTTAGGAAA 46571 | | || ||||||||| Sbjct 538 AATATAACTTTAGGAAA 522 >seq34305 Length=2218 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 62076 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 62135 ||||||||||| | || ||||| ||||||| || || || |||||||||||||| Sbjct 599 GTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGCGAGTTAAAGCGAACG 658 Query 62136 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 62195 ||||| || || || |||||||| | ||| |||||||| || || | | | ||| || Sbjct 659 GCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGGTTATCCATTGCGTCC 718 Query 62196 TCCAGAGTTTCGCGACGCAGAATGTTAACGTTCAGGTGTTGACCACCTTCAAT 62248 || |||| || || | |||||| ||||| || || || |||||||| Sbjct 719 ATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCGCCTTCAAT 771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535190885760000