Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_005066.1 Length=164018 Score E Sequences producing significant alignments: (Bits) Value seq33108 134 1e-26 seq34305 116 4e-21 >seq33108 Length=3479 Score = 134 bits (148), Expect = 1e-26 Identities = 136/177 (77%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 53628 TTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCG 53687 ||| ||||||||||| || || ||||||||||| || || || ||||| ||| ||||| Sbjct 2959 TTCCGTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGAATTAAAGCG 2900 Query 53688 CACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGC 53747 ||| || || || ||||| ||||| || |||||||| |||||||||||||||| || || Sbjct 2899 CACGGCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATGTTTCACGGC 2840 Query 53748 GTCCAGCAACATTTCTCGTAACAATACGTTAATATTCAAATGCTGACCACCTTCAAC 53804 ||| || | |||| || || ||||||| || || ||||| || ||||| || Sbjct 2839 GTCTTCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCCTTCCAC 2783 >seq34305 Length=2218 Score = 116 bits (128), Expect = 4e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 53617 AATTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGA 53676 || ||||| || | |||||||||||| | || ||||| ||||||| ||| || || Sbjct 584 AACTAGAGTGACTGGGTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGC 643 Query 53677 CTATTGAAGCGCACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGA 53736 || ||||| || || || || |||||||| || || | ||| || || |||||||| Sbjct 644 GAGTTAAAGCGAACGGCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGG 703 Query 53737 TGTTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAATATTCAAATGCTGACCA 53796 | || | ||||||| ||||||||| || || ||||||| ||||| |||||| || Sbjct 704 TTATCCATTGCGTCCATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCG 763 Query 53797 CCTTCAA 53803 ||||||| Sbjct 764 CCTTCAA 770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 523874946664000