Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_005069.1 Length=46339 Score E Sequences producing significant alignments: (Bits) Value seq43257 266 1e-66 seq36111 246 9e-61 seq60335 156 1e-33 seq36444 111 5e-20 seq75318 91.5 4e-14 seq74801 82.4 2e-11 >seq43257 Length=1618 Score = 266 bits (294), Expect = 1e-66 Identities = 368/509 (72%), Gaps = 6/509 (1%) Strand=Plus/Minus Query 42978 TGAGCGCGGCAATTCTGGCGCTGATCGCTACTGGAGCTTCTGCACCAGTAATGATGTCTC 43037 ||||||||||||| |||| ||||| ||| ||| || |||| || || ||||| || Sbjct 1107 TGAGCGCGGCAATGGTGGCCCTGATAGCTGGTGGCGCCACTGCCCCCGTTCTGATGGATC 1048 Query 43038 AATTTCAGAAAGAAAAAGAAGGCACAAGCCTGATTGCTTATCCTGACAACGGCGGTGTCT 43097 | |||||| | || ||||| ||| | | ||||| || | ||||||||||| ||| Sbjct 1047 AGTTTCAGCAGGAGAAAGAGGGCGGCCGTTTAATTGCATACGCCGACAACGGCGGCATCT 988 Query 43098 GGACTATTTGCGGTGGTGTTACGCGCGTGGACGGAAAACCAGTCGTTAAGGGCATGAAGC 43157 |||| || ||||| || || || ||||| | || || || || | ||||| ||| | Sbjct 987 GGACGATATGCGGCGGCGTGACACGCGTAAATGGCAAGCCGGTTATAAAGGGAATGCGCC 928 Query 43158 TCACT-CAAACACAATGCAACTCCATCGACAAGGCAG-AGCAAGCCAAAGCGCTGTTATG 43215 | || | || || ||| | | ||||||| ||||| | || || ||||| | || Sbjct 927 TGACCGCTGAC-CAGTGCCGCGCTATCGACAGGGCAGGAACAGGCTAAAGCATTAGCCTG 869 Query 43216 GGTGCAGAAGAATGTCTACGTTCCTCTGACAGAGCCGCAAAAGGTCGGGATCGCTTCATT 43275 ||| | || || || ||||||| ||||| || ||||| ||||| || || || ||||| Sbjct 868 GGTAGATAA-AACGTACACGTTCCACTGACCGAACCGCAGAAGGTTGGCATAGCGTCATT 810 Query 43276 CTGCCCTTGGAACATTGGCCCGAGTAAATGTTTCACTTCTACGTTCTATCGAAAATTAAA 43335 ||| || |||||||||||||| ||||||| | | || |||||||| || ||| |||| Sbjct 809 CTGTCCGTGGAACATTGGCCCCGGTAAATGCCTGCCATCAACGTTCTACCGGAAACTAAA 750 Query 43336 TTTAGGCGACCGCTTAGGCGCGTGCGCTGAAATTAAACGCTGGATACATGACGGCGGGAA 43395 |||||| ||| | || || || || || || || ||||||||| ||||||||||| Sbjct 749 CGCAGGCGATCGCCTGGGTGCATGTGCAGAGATAAAGCGCTGGATATTCGACGGCGGGAA 690 Query 43396 AGATTGCCGTATTCGCTCCAATAACTGTTACGGGCAGATAGAGCGCCGTGAACAAGAAAG 43455 ||||||||| |||||||| ||| |||||||||||| | |||||||| || ||| Sbjct 689 AGATTGCCGCATTCGCTCTAATGGCTGTTACGGGCAAGTTATCCGCCGTGACCAGGAATC 630 Query 43456 CGAATTAACGTGTTGGGGGCTGGATGAAT 43484 || | || || ||||| ||||| ||| Sbjct 629 AGAGCTCACATGCTGGGG--TGGATCAAT 603 >seq36111 Length=5564 Score = 246 bits (272), Expect = 9e-61 Identities = 548/811 (68%), Gaps = 35/811 (4%) Strand=Plus/Minus Query 7878 CTTATAGCAGTTGGTGAAGAAGTAGGGACTAAAATTCTGCGGGATGCAGGTCGAGCCGCG 7937 ||||| || | |||||| ||| || || ||| || |||| || || || || || || Sbjct 791 CTTATCGCCTTGGGTGAAAAAGCCGGTACAAAAGTTTTGCGTGACGCTGGCCGCGCTGCA 732 Query 7938 ATGGCAGTAGTAGAAGCGGATATGAAACAAAATGCAGGCTATGACAATAGTTCTACCAAT 7997 | | | | || || |||||||||| | | ||||| || ||| | || | || Sbjct 731 CTTGAAATCGTTGAGCAGGATATGAAAGAGCACGCAGGTTACGACGAG---TCCGCAAAG 675 Query 7998 G---CTCATATGCGGGACTCGATAAAAATCAGATC---ATCCCGAGGAAAAGCAGGTAGC 8051 | | || ||||| ||||| || |||||| | || | |||| |||| | | Sbjct 674 GGCCCGCACATGCGTGACTCAATCAAAATCCGTTCTACAACCCGCACCAAAG---GCAAT 618 Query 8052 ACAGTAGTTGTGCTGCGTGTAGGACCTACCCGAAGC--CACTATATGAAGGCGTTAGCTC 8109 |||| || ||||| ||||| ||||| | |||| |||| || || ||| | |||| Sbjct 617 GCAGTCGTCGTGCTTCGTGTCGGACCCAGT--AAGCAGCACTTCATTAAAGCGCTGGCTC 560 Query 8110 AAGAGTTTGGCACTATAAAACAGGTTGCTAAACCATTTATCCGCCCTGCATTGGACTACA 8169 | ||||| ||||| | ||||||||| || || ||||| ||||| || |||| |||| Sbjct 559 AGGAGTTCGGCACAGTGAAACAGGTTCCTTCCCCCTTTATTCGCCCGGCGCTGGATTACA 500 Query 8170 ACAAAATGCAGGTTCTTCGCATTCTCACCGTTGAAATCCGTGATGGG-TTAAGCACCCTT 8228 ||||| | || || | || ||| | |||||||| || || | || | || Sbjct 499 ACAAATCCCGCGTCCTCAGAATCCTCGCGGTTGAAATACGGGACCGCATTCAAAAC---- 444 Query 8229 AGCCGGTAGCATTCTGCTGCCTCATTTACCTATTAAAAAAGAGAGAAATAT-ATGGCTGG 8287 | | ||||||| ||| | |||| || || | |||||||| | ||||||| Sbjct 443 AACGGGTAGCA-------GCCGC---TACCACTTCAACA-GAGAGAAAAGTCATGGCTGA 395 Query 8288 AAAATCCTCGCCAGAATACGCCATGCTCCCAGCTGGGGTTGTTGTTAAATGGGGTGCTGT 8347 ||| | |||||||||||||| ||||| || ||||| || |||| ||||| || | Sbjct 394 TAAAACTTCGCCAGAATACGCGATGCTGCCTGCTGGCACCGTGGTTATGTGGGGCGCGGC 335 Query 8348 TGGCGATACCTCCTTAACAATGAAGCCGTTGGTTAACTGTAAGGCTGTTGGTGCTACTGG 8407 ||||| | | ||||||| ||| || ||||||||||||| |||| || || || Sbjct 334 TGGCGCGGCGGTTTCCGCAATGAAACCGCTGATTAACTGTAAGGCGCTTGGCGCAACGGG 275 Query 8408 TTTAACTGGTGGCTATGTAGATTGCACTACTTTAATCGATACGAATAAACAGTCTATTTC 8467 || || |||| || || ||||| || | || ||||||| ||||||| |||||| Sbjct 274 CCAGACGGGCGGCTTCGTTGACTGCACCACGCTCATTGATACGAGCAAACAGTTTATTTC 215 Query 8468 TGATTTGCCTGAAGGACCTGAAAAATCTTTAGGGTTTATTGACGATCCGGAAAATGAAGA 8527 ||| |||||||||| ||||||||||| | || ||| | ||||| ||| || || Sbjct 214 TGACCTGCCTGAAGGGCCTGAAAAATCACTCGGCTTTGTGGACGACCCGTCTAACACCGA 155 Query 8528 TTTTGCGGCATTGCTTACCGCCGCAGCTGCA-CGTGAGACTGTACAGTTTTATATGGAAT 8586 ||||||||| || || | ||| || || | ||| |||| || |||||||| | ||| Sbjct 154 TTTTGCGGCCTTCCTCAACGCTGC-GCAAAACCGTCAGACGGTGCAGTTTTACGTCGAAC 96 Query 8587 TGCCGAATGGCCGTACAGCCACGCAAATATTAGCGCTTTCAGGTTGGCAGTTGGCCGAGG 8646 |||| || || || || |||| | | ||||| || || |||||| || || Sbjct 95 TGCCAAACGGTCGCACCGCCAACATGGTGCTGGCGCTGTCTGGCTGGCAGATGAATGAAA 36 Query 8647 TTTCTGCCCCTGCAAATGAAGTGATCCAGAT 8677 | | || ||||| | |||||| || ||||| Sbjct 35 TCACCGCACCTGCCAGTGAAGTCATTCAGAT 5 >seq60335 Length=1976 Score = 156 bits (172), Expect = 1e-33 Identities = 286/417 (69%), Gaps = 4/417 (1%) Strand=Plus/Minus Query 41228 TCTATGGAAAACACTGTAAAAATAAACAGTGCAAGTTTAGTACATGCCGATTCGTTGCAA 41287 ||||||||||| |||||||| |||||||| | | | || |||| ||||| ||||| Sbjct 952 TCTATGGAAAATACTGTAAATTCAAACAGTGTTAATCTGGTTAATGCTGATTCACTGCAA 893 Query 41288 TACATTAAAACCCTGCCCGACAATTATATCGATGCAATCATTACTGATCCCCCCTACTAC 41347 | ||| |||||||| || |||| || | | || ||| || || || || || | | Sbjct 892 TTCATCAAAACCCTTCCAGACAGTTCTGTTGACCTGATCGCCACCGACCCACCTTATTTC 833 Query 41348 CGAGTTAAATCGAATAGTTGGGATAATCAATGG--GCATCGGTTCCCGATTTTCTAGCGT 41405 || |||||| || || ||||||||||| ||| | | | | ||| || ||| Sbjct 832 CGTGTTAAAGCGTGTAAATGGGATAATCAGTGGAAGAGTGAGGAAC--ATTACCTTTCGT 775 Query 41406 GGCTTGATGAGTTTTTTGCTGAATTTTGGCGGGTACTGAAACCTAATGGTTCTCTTTATT 41465 ||||| ||||| || || | || || ||||||||||| ||||| || ||||||| Sbjct 774 GGCTTTATGAGCTTCTTTCAGAGTTCTGGCGGGTACTTAAACCGTCAGGCAGTCTTTATA 715 Query 41466 TATTTTGTGGCCCCAAGTTATCGGCGGATACAGAAATATTGATGAGAGATAGGTTTAATG 41525 | ||||| || || | | || || || ||| || || | | || |||| ||| Sbjct 714 TGTTTTGCGGTTCCCGCCTGGCAGCTGACACCGAATTACTGGTTCGCAATCGGTTCGATG 655 Query 41526 TGTTGAATCATATTGTTTGGGCAAAACCATCTGGCCGCTGGAAAGGGGCGAGTAAAGAGT 41585 |||||| ||||||||| ||||| |||||| ||||| |||| || | |||||| Sbjct 654 TGTTGAGTCATATTGTGTGGGCCAAACCACATGGCCCATGGATGAGGCAAAACAAAGAGA 595 Query 41586 CTTTCCGATCCTATTTCCCAGCTACTGAGCATGTTTTATTTGCTGAGCATTATGGCG 41642 ||| || | | |||||| || || || | | | ||||||| |||||||| || Sbjct 594 GTTTGCGGGCTTTTTTCCCTGCGACGGAACGAATAATTTTTGCTGCGCATTATGCCG 538 >seq36444 Length=2587 Score = 111 bits (122), Expect = 5e-20 Identities = 91/110 (83%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 23723 ATGGCAGTCCAGGCGGAGCAGCTTTCGAGCTGGCCGGTATCCGTTGGGGCCGGTATTCCT 23782 |||| | || ||||| ||||| |||| |||||||||| ||| ||| |||||||||||| Sbjct 1494 ATGGTGGCCCGGGCGGGGCAGCCTTCGGGCTGGCCGGTTTCCTTTGTTGCCGGTATTCCT 1435 Query 23783 ACCTCCGTTTGGGCTGCCACCCCATAGAGTGTAGGAACTCTGGTGGTAGC 23832 ||| |||| ||||| ||||||| ||| |||||||||||||||||||| Sbjct 1434 ACCCCCGTCCGGGCTACCACCCC--TGAGCGTAGGAACTCTGGTGGTAGC 1387 >seq75318 Length=1714 Score = 91.5 bits (100), Expect = 4e-14 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 14612 ATCCCGACTGGCAAAAAAGACTTACGCACGTATTACAGGCCGCTTCCGAGCGGCCTTTTT 14671 ||||||||||||| ||||||||| |||| | ||||||| |||||||||||| Sbjct 1572 ATCCCGACTGGCAGAAAAGACTTGTCACCGTAATCAAGGCCGCAGAGAAGCGGCCTTTTT 1631 Query 14672 CATGGGGTGAAAATGACTGTTGCCTATTTGCTGCGGATTGCGCATTTGCAATATGTGG 14729 |||||||| |||| ||||| ||||| |||||||| || || | ||||| ||||| Sbjct 1632 CATGGGGTAAAAACGACTGCTGCCTGTTTGCTGCTGACTGTGTTGAGGCAATGTGTGG 1689 >seq74801 Length=485 Score = 82.4 bits (90), Expect = 2e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 14648 AGGCCGCTTCCGAGCGGCCTTTTTCATGGGGTGAAAATGACTGTTGCCTATTTGCTGCGG 14707 ||||||| ||||||||||||||||||||||| || ||||| ||||| || || || | Sbjct 306 AGGCCGCCTCCGAGCGGCCTTTTTCATGGGGCGAGTTCGACTGCTGCCTGTTCGCCGCCG 247 Query 14708 ATTGCGCATTTGCAATATGTGGCATTGACCCACTTGCCGCTTATCGAGGCAAGTACGA 14765 ||||||| | || | || ||| | ||||| |||| || || ||| ||||||| Sbjct 246 ATTGCGCCCTGGCGGTGTGCGGCGTGGACCCGGCGGCCGACTACCGGGGCCAGTACGA 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147933945228600