Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq33499 158 1e-33 seq61837 104 3e-17 seq33108 98.7 1e-15 seq7208 87.8 2e-12 >seq33499 Length=26748 Score = 158 bits (174), Expect = 1e-33 Identities = 265/381 (70%), Gaps = 2/381 (1%) Strand=Plus/Minus Query 55285 TCCATCAGCATCTGGCCATCGTAACCAGCACCTACGACAGTCTGCGGTACACCACCTTGA 55344 ||||| | || || || ||||| || |||| | || || || |||||||||||||| Sbjct 24084 TCCATAATCAACTTACCTTCGTAGTCACCACCAATAACTGTTTGTGGTACACCACCTTGG 24025 Query 55345 TACTTGTTGGCGCGAATCATTTCAACTTCCAGCTGACGCCATTTGATCATTTCAGGGGTG 55404 || || | || || ||||||||||||| || || ||| ||||| || || ||| Sbjct 24024 TATTTCTCAGCACGTTTCATTTCAACTTCGAGTTGTTTCCAACGAATCATCTCTGGAGTG 23965 Query 55405 ATAGTTTTCTGCAACAGGGAGTTAGCTTCGGCTTCTTTACCAGCAGCGTACAGCTTGGCA 55464 || ||||||||||||| ||||||||| |||||||| |||||| || | || ||| Sbjct 23964 ATTGTTTTCTGCAACACACTGTTAGCTTCAGCTTCTTTTTGAGCAGCATATAATTTAGCA 23905 Query 55465 TCAGCATCTCGCTCGTTGGCTACAGCGTTCTGTTCGCGAGCTTCTCGTGCGGCCTCGGCA 55524 || |||||||| ||||| || || | | | || |||||||| | ||||| || Sbjct 23904 TCTGCATCTCGTTCGTTTGCCTGGGCTTCATTATTACGGGCTTCTCGATCAGCCTCTGCC 23845 Query 55525 GTCTTAACTTGTTGCTGGGCAACCTTTTCAGCCTTGTCCAGGTCAGCTTGCGCTTGGTTT 55584 |||||||| |||||| | | || | | |||||| ||||| || ||| ||| Sbjct 23844 TTCTTAACTGCTTGCTGTGTTTCTTTAGCTACTCGGTCCAGATCAGCCTGTGCTGCGTTA 23785 Query 55585 ACCGCTTCTTCACGGAT-TTTGGTTTGCTCAACTTGATCTTGGATCAGCTTAGGCAGAGT 55643 ||| ||||||||| || |||| || | | || || | ||| | | ||||| || Sbjct 23784 ACCTGTTCTTCACGAATCTTTGTATTTGTTACCTGCTTCAT-GATTACATCAGGCAAGGT 23726 Query 55644 GATTTCCTGCAGGAAAACTTC 55664 ||| || |||| ||| | ||| Sbjct 23725 GATATCTTGCAAGAAGATTTC 23705 >seq61837 Length=1354 Score = 104 bits (114), Expect = 3e-17 Identities = 202/296 (68%), Gaps = 2/296 (1%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 ||||| || || ||||| ||| ||| | |||| | ||||| | ||||| || || Sbjct 11 CCGTGTGTAAGGTGGCCACCGTGCGCCAGGTTCATACCAAGAACGGTGTCACCTGGTTTG 70 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || || | ||||| ||| || || |||| |||||| ||||| || |||||| || Sbjct 71 AGTGCAGCGAGATAAACAGCCATATTGGCCTGTGCACCGGAGTGAGGCTGTACGTTTACG 130 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117 | || |||||||||||||| || || ||| | | |||| ||| | Sbjct 131 TGCTCAGCACCGAACAGTTCTTTAGCGCGATCGCGTGCGATATCTTCGACGATATCCACA 190 Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAA 7177 | | ||||||||||| || |||||||||||||| || || || || ||||| || | Sbjct 191 TGCTCACAGCCGCCATAGTAACGTTTGCCCGGATAGCCTTCTGCGTATTTGTTCGTCAGT 250 Query 7178 ATAGAACCCTGTGCTTTCATAACATCGTCTGACAC-ATAGTTTTCGGACGCAATCA 7232 | ||| ||| ||||| |||||| | || || ||| |||||||| || |||| Sbjct 251 ACAGAGCCCATTGCTTCCATAACTGCTTCGCTTACGATA-TTTTCGGAAGCGATCA 305 >seq33108 Length=3479 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/161 (74%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 65967 ATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCGTACGGCATAACCGGAAACA 66026 || ||||| || ||||| ||||| || | | ||||||||| |||||||| ||||||||| Sbjct 2940 ATGACGTCACGCTGTTGTTCAGGCGTCAGCGAATTAAAGCGCACGGCATACCCGGAAACA 2881 Query 66027 CGGATGGTTAGTTGGGGATATTTTTCTGGA---TTAACGATTGCATCTTCCAGGGTATTT 66083 || ||||| || || ||||| || || ||| || ||| || |||||||| || | Sbjct 2880 CGAATGGTCAGCTGCGGATACTTCTCAGGATGTTTCACG---GCGTCTTCCAGCGTTTCA 2824 Query 66084 CGGTCAAGAACATTTACGTTGAGATGCTGACCACCTTCAAC 66124 ||| || || || ||||| | ||||| || ||||| || Sbjct 2823 CGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCCTTCCAC 2783 >seq7208 Length=1388 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 ||||| || || || |||||| ||| | ||| |||| | | ||||| |||||| Sbjct 609 CCGTGGGTCAGGTGACCGCCGTGAGCCAGGCTCATGCCGAGGATGGTGTCACC-GGCTTC 667 Query 6998 -AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGC 7056 | || || |||| || ||| ||| || || || ||||| || || || ||||| || Sbjct 668 GATCAGCGCGAGGTAGACGGCCGAGTTGGCCTGGGAGCCGGAGTGCGGCTGGACGTTGGC 727 Query 7057 GAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGC 7116 | | | | | ||||| | || || || || || ||||| | ||||| | ||| | Sbjct 728 GTAGTCGGCGCCGAACAGCTGCTTGGCGCGGTCGATGGCCAGTTGCTCGACCACGTCGAC 787 Query 7117 TTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGT 7173 | | ||||||||||||| || || ||| ||||| || || || ||||||||||| Sbjct 788 GTATTCGCAGCCGCCATAGTAGCGCTTGTGGGGATAGCCTTCGGCGTACTTGTTGGT 844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554458652188000