Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_005178.1 Length=37611 Score E Sequences producing significant alignments: (Bits) Value seq74251 161 2e-35 seq60360 138 3e-28 seq53231 107 5e-19 seq1029 80.6 6e-11 >seq74251 Length=708 Score = 161 bits (178), Expect = 2e-35 Identities = 324/469 (69%), Gaps = 26/469 (6%) Strand=Plus/Minus Query 3265 CATGAAATCAAGGCACTGCGCCCGTTCATTCGCCGC--GACTTCACCAAGCTACTCCCGA 3322 || ||| ||||||| |||| || ||| || ||| ||| || || || |||| Sbjct 684 CAGGAACTCAAGGCCCTGCAACCTTTCCGCCGACGCTCGAC--CAAAAACCTGTTCCCCG 627 Query 3323 CCGACGTCTATTCCTGCG-ACGGCCACACGTTCGACGCCGAGGTCCAGCACCCGATGCAC 3381 ||||||| | | ||| ||||||||| ||||||||||||| || |||| || Sbjct 626 GGGACGTCT-TCACGGCGGACGGCCACAAGTTCGACGCCGAGATCATCAACCCTCTGACG 568 Query 3382 GGCCGGCCCTTCCGGCCGGAAATCACCACCATCATCGACATCCGTACCCGTCGAATTCCG 3441 |||| ||| | | | |||||||||||||| | |||||| || ||||| || | | Sbjct 567 GGCCAGCCGTACAGACCGGAAATCACCACGGTTATCGACGTCGCCACCCGGCGCGTAGTG 508 Query 3442 GGATGGTCCACCGGCCTGGCCGAGTCGGCCCTGGTGGTGGTCGATGCCCTACGTGACGCC 3501 || || |||| ||||||||||||| | | ||| | || | ||| |||||||| Sbjct 507 GGTATTTCGGTCGGCGAGGCCGAGTCGGCCATCGGTGTGCTGGACG-CCTGCGTGACGC- 450 Query 3502 TGCATCAAGGGCG-GCGTCCCGGCCATCTTCTACGTGGACAACGGCTCGGGCTACGTCAA 3560 |||| || || || | || | |||||||||||||| || ||||||| || ||| Sbjct 449 --CATC-CGGTCGTGCATGTTCGCTGTGTTCTACGTGGACAATGGTTCGGGCTTCGCCAA 393 Query 3561 CCACATGATGCGCGACGAGGCGGTCGGCCTTATGGGCCGCCTGGGCATCGA-TATGAAGA 3619 ||| ||||||| ||||| ||| |||||||||| ||| |||| | Sbjct 392 TGACACAGTGCGCGA------GGTCG------TGGACCGCCTGGGCGGCGACCATGACGC 345 Query 3620 ACAGCCTGCCCTACAACAGTCAGGCGCGGGGTGTGATTGAGCGCGTCCACCAGAGCCTGT 3679 || |||||||||||||| ||||| || ||| | ||||| | |||||||| | | | Sbjct 344 ACTCGCTGCCCTACAACAGCCAGGCACGCGGTCCTGTCGAGCGAG-CCACCAGACCATTT 286 Query 3680 GGATTCGCGCCGCCAAGGAACTGCCCGGCTACATCGGCGCCGACATGGA 3728 || | || |||||| | ||| || ||||||||||||| |||||||| Sbjct 285 GGGTCAATGCGGCCAAGAAGCTGACCAGCTACATCGGCGCAGACATGGA 237 >seq60360 Length=752 Score = 138 bits (152), Expect = 3e-28 Identities = 224/313 (72%), Gaps = 12/313 (4%) Strand=Plus/Plus Query 26477 GCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAG---CTGGCCGACGAA 26533 || ||||||||||| || ||||| |||||||||||||| |||| ||||||||||| Sbjct 53 GCCACCGGCAAGGCCGTCTCGGAGACGGTCGCCGAGTT---CAAGCGCCTGGCCGACGAG 109 Query 26534 CCGGTCAAAGCCTC-GCAGCAACTCAACGAGAAATATCACTACCTGACCGCCTCGGTTTA 26592 ||| ||| ||||| || || || |||||| | || ||||||| |||||| |||| || Sbjct 110 CCGACCAAGGCCTCGGCCGC-GCTGAACGAGCAGTACAACTACCTCACCGCCGCGGTCTA 168 Query 26593 CGAGCAGATAGCCGCCCTCGATCAGCAAGGCGATTCG-CTGGGGCCGCCCAACTGGCCAT 26651 ||| ||||| || || || |||| ||| | | | | |||||| | |||||| Sbjct 169 CGACCAGATCCGGGCGCTGGAGGAGCAGGGCAACAAGACCGCCGCCGCCAACCTGGCCGA 228 Query 26652 GGACGCCTATAGCCAG-GCAATGGACGAGCGGGCGAGCCAGATCGTCGAGAACCTGGGCA 26710 || ||||| ||| | || || | ||||| || | | ||| |||||||| || | Sbjct 229 GGCGACCTAT-GCCGGCGCCTTGCAGGAGCGCGCCAAGAACATCAAGGAGAACCTCGGAA 287 Query 26711 CCCTGGAAACCGCTTGGAAGACCGTTGCCGGGGTGGCCAAGGGCGCCTGGGACGAAATGC 26770 || | || | || ||||||| ||| || | | |||||||| |||||||||| |||| Sbjct 288 CCATTGAGTCTGCCTGGAAGAGCGTCACCAGCGGCGCCAAGGG-GCCTGGGACGCGATGC 346 Query 26771 TCGGCGTGGGCCG 26783 || | | ||||| Sbjct 347 TCAACATCGGCCG 359 >seq53231 Length=1021 Score = 107 bits (118), Expect = 5e-19 Identities = 173/242 (71%), Gaps = 10/242 (4%) Strand=Plus/Plus Query 21996 CACTGCTGAGCT-GGTAGTGGACGGGCGTATCGAGTCCGACACCGCCTGGTTCCTGCTGG 22054 |||||| ||||| ||| || || ||| | || |||||||||||||||||||| | Sbjct 1 CACTGCCGAGCTTGGTGGTCGAGTCGCGCCTGACCTCGGACACCGCCTGGTTCCTGCTCG 60 Query 22055 ACACCACCAAGCCGGTAAAACCGTTCATCT-TCCAGCCCAGGAAGCAGCCGGAATTCGTT 22113 |||||| |||||| || || ||||||| || || | | ||| |||| | ||| Sbjct 61 ACACCAGCAAGCCAGTGCGGCCCTTCATCTATCAAGAGCGCAAGGCA-CCGGTCT-CGTC 118 Query 22114 TCCCAGGTCAACCTGGATTCGGATGACGTCTTCAACCTGCGCAAGCTG---AAGTTCGGC 22170 || || ||| || |||| ||||| ||||||| ||||| |||||||| Sbjct 119 CAGCAAATCGACCCCGAGGCGGACGACGTTTTCAACC---GCAAGGAATACAAGTTCGGT 175 Query 22171 GCCGAAGCCCGCGCTGCTGCCGGTTACGGCTTCTGGCAGCTGGCCTATGGCTCCACCGGC 22230 || ||||| || || || | || || |||||||||||| ||||||||||||| ||||| Sbjct 176 GCGGAAGCGCGGGCAGCGGGGGGCTATGGCTTCTGGCAGATGGCCTATGGCTCGACCGGT 235 Query 22231 AC 22232 || Sbjct 236 AC 237 >seq1029 Length=3852 Score = 80.6 bits (88), Expect = 6e-11 Identities = 108/148 (73%), Gaps = 7/148 (5%) Strand=Plus/Minus Query 9627 GACATGTACCAGGGAACGGCTGATGCACTCGATCTGATCTGCGCGGCCGGTGGCTTCGCC 9686 || ||||||||| | || || || || || || | ||||||||| ||||| |||||| Sbjct 3762 GAGATGTACCAGAGGACCGCCGAGGCCCTGGACCGGATCTGCGCCGCCGGCAGCTTCGAA 3703 Query 9687 GAGCCGGCCGAGGCGGTCACCTTGCTCCTACACAACGTTGCCGA---AATTGCTGAGCGT 9743 ||| |||||||| | | ||| |||| | ||| |||||| ||| || ||||| Sbjct 3702 CAGCGGGCCGAGGTGTTGACCCTGCTGATCCACTC---TGCCGATCAAATCGCCCAGCGT 3646 Query 9744 GACGCGTCACGTTTTG-CCGAATTGATC 9770 ||| ||||||||||| ||||| || || Sbjct 3645 GACATGTCACGTTTTGCCCGAAATGGTC 3618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120047561047800