Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq38626 179 6e-40 seq31280 178 2e-39 seq48940 113 7e-20 seq36028 95.1 2e-14 seq52264 93.3 6e-14 seq74161 86.0 9e-12 >seq38626 Length=1471 Score = 179 bits (198), Expect = 6e-40 Identities = 544/826 (66%), Gaps = 22/826 (3%) Strand=Plus/Minus Query 37957 AAACTGCGGCATCCCATAGGGAACTTAAAGCTGCCAGTTGTTTCAACAACTTTATCATAA 38016 |||||||| || ||||| || |||||| ||| || | ||| || | ||||||| Sbjct 1453 AAACTGCGACAGCCCATCGGCGTTTTAAAGGAGCCGGTAACCTTAACGACCTGATCATAA 1394 Query 38017 CTCAGAATATCTGGATACATACGCTTAGAAGCGCACTCCAGTGCCAGTTGCTTGATACGA 38076 | |||||||| |||||||| || || || || |||| ||||||||||| || | Sbjct 1393 TTGAGAATATCGGGATACATTCGTTTGCTGGCACAGGCCAGCGCCAGTTGCTTAATGTCA 1334 Query 38077 TAAAGCGGGTCAGTTGGCTTCAAGTTGTGTC--CGTCTTTCAGA---GCAAACACCAGTT 38131 || | ||| | || | || || ||| | || ||||||||||| | Sbjct 1333 TA-----GTTCACATCGCCCGGACGACGGTTAACGCCTTCCCGAATCGCAAACACCAGCT 1279 Query 38132 TCGGGAACACCGGAGTGATACCCTCTTTGCCAAGTCCAGCCAGTCGAACTTTCAAGATCG 38191 ||||||| || | || | | | ||| || ||||| ||||| || |||||| | Sbjct 1278 TCGGGAAGACGGCCGTTTTGCGATTTTTACCCAGTCCTGCCAGACGGTTACGCAAGATGG 1219 Query 38192 CTTCCTGAATCAGTTCAGCTTCCCAGCTTTCACCCAGACCAAAGCCGAATGT-ACAGAAG 38250 | ||| | ||| || |||||||| |||| || || || || || ||| || Sbjct 1218 ATGTCTGCACCAGACGGGCGGCCCAGCTTGTCCCCAACCCGAACCCAAACGTGACA-AAC 1160 Query 38251 GGAGTTTGACCGTTCGCGGAGTGAAGAGTGTTCACCTCGTATTCGAGTCCCTGCATTGCA 38310 || || || ||||| || | || || ||||| ||||| ||||| || ||| | || Sbjct 1159 GGTGTCTGGCCGTTTGCCGTATGCAGCGTGTTTACCTCATATTCCAGCGACTGAAAGGCG 1100 Query 38311 TCATA-CACAGCTTTGTGAGT-CTTTGCAATAGCGTATTCTTTCGCATCTGGAATTTTCC 38368 ||||| ||| |||| | || | || || || ||| ||| | ||| | | || Sbjct 1099 TCATAGCACT-CTTTTTCGGTACGCTGGCGG-GCATAGGCTTCCGCCTGGGGA-TATCCC 1043 Query 38369 AATAACGGGCTTCGTCCAAATGCTTTTCATGAGTCATCTTAACATACGGTGCCAGCACTT 38428 | | | ||| | || |||| || | | ||| |||||| ||||||||||| | Sbjct 1042 AGTGCTGCGCTACCTCTTTATGCCGGGCAAAACTTTTCTCAACATAGGGTGCCAGCACCT 983 Query 38429 CGTCAATACGATTAATTGTGTTGCCGCCGTAAATGTGACTTGCTACTTGCGCAATAATCT 38488 ||||||||||||| | ||| | ||||| || || || || || || || ||||| || | Sbjct 982 CGTCAATACGATTCAGCGTGGTTCCGCCATAGATATGGCTGGCAACCTGGGCAATGATTT 923 Query 38489 GAGCGACTACGGCAGCAGCGGTAGAAATGCTTTTCGGAGTTTCGATCTGTGCATTTCCCA 38548 | || || |||| ||||||| ||| | || | ||||||| || || |||| Sbjct 922 GCGCAGTCACCGCAGTGGCGGTAGCAATCGACCTGGGCGGCTCGATCTCCGCGTTGCCCA 863 Query 38549 TACGGAACCCG-CGATCTAACATGCCTTTGACATCTATCAACATGCAGTTAAACATTGGG 38607 | || ||| | || | ||||||||| | ||| |||| ||||||||||||||| ||| Sbjct 862 TTTTAAAACCGTTGGTC-AGCATGCCTTTCAGATCGATCAGCATGCAGTTAAACATGGGG 804 Query 38608 AAGAATGGAGAATAGTCAAGATCATGGAAGTGCAGCCAGCCTTTTTCGTGTGCTTGCATA 38667 ||||| || | || || ||||| || | || | | ||| || || || || | Sbjct 803 AAGAAAGGCGCGTAATCGAGATCGTGATAATGGATCTCGCCGCGCTCATGCGCCTGAACC 744 Query 38668 ACTTCAACAGGAAG---ATAATGCTTTGCAAAGTGCTTACTAACAATACCAGCAACCAGA 38724 || ||| ||| || | |||| || | || || ||||| || || | || | Sbjct 743 ACATCACGAGGCAGGATTTGCTGCTGGGCGTAATGTTTCGCCACAATCCCGGCCAGCAAA 684 Query 38725 TCGCGTTGAGTAGGGATTACTTTAGCGTCTTTGTTAGCATTCTCAT 38770 |||||||| || ||||| ||||| |||||| || ||||| |||| Sbjct 683 TCGCGTTGGGTCGGGATCACTTTGCTGTCTTTATTGGCATTTTCAT 638 >seq31280 Length=10079 Score = 178 bits (196), Expect = 2e-39 Identities = 318/464 (69%), Gaps = 3/464 (1%) Strand=Plus/Plus Query 43568 ACGTCTG---GACTAAAGAGCGTGATATAGTCGTCATTTTTCAGACGCTCGAAAAACAGC 43624 ||||||| | ||||| |||||||| | ||| | || ||| |||| | | | || Sbjct 1279 ACGTCTGACGGGCTAAACAGCGTGATGTCCTCGCCCTTCAGCAGGCGCTGGTACATCATT 1338 Query 43625 TTGTTGATTTGGATACCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTTGTTG 43684 ||||||| || | ||||||||| | || || | || || ||||||| || |||| Sbjct 1339 TTGTTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTG 1398 Query 43685 TTTTTCAGAACAAGGATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGTAGCA 43744 |||||||| || | | |||| ||||| ||||||||||| |||||| | || || || Sbjct 1399 TTTTTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGCGTCGCT 1458 Query 43745 GCGCCACCGCGTACACCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTTCCAG 43804 ||||| || || || || ||||| || || ||| ||||| |||||||| | || || Sbjct 1459 GCGCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAG 1518 Query 43805 AACGGAATAATACCAGTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGCACGA 43864 ||||| ||| ||| || ||| | ||||||| | ||||| | || || || Sbjct 1519 AACGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGG 1578 Query 43865 ATAGCGCCACCGTTGATACCGATACCAGCGCGTTTGCTAATATAGTCAACGATTGAACTT 43924 ||| || |||| ||||| ||||| ||||||| || || | || || | || Sbjct 1579 ATACGACCCGCGTTAATACCAATACCTGCGCGTTGTGAAACGTATTTCACAATAGCGCTG 1638 Query 43925 GCGGTAGCGTTAATGCTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGCTAAAC 43984 | ||| ||||| ||| ||| || |||||| | ||| ||| || || ||||| ||| Sbjct 1639 GAGGTCGCGTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGGAGCTGAAC 1698 Query 43985 TGGCGAGTCGGGGTTCGAACACCAGCAAGAATTGGCGTCGGTAG 44028 || || || || || || || || | | ||||||||||| || Sbjct 1699 TGACGGGTTGGCGTACGCACTCCCGACATGATTGGCGTCGGCAG 1742 >seq48940 Length=919 Score = 113 bits (124), Expect = 7e-20 Identities = 148/204 (73%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 112157 ACTTCTTTCACGCGAGTAACAGAACGTTTGGTAACGTTGATCGAACTACCCTGATACCAG 112216 |||||||||||||| || || || ||||| || ||||| || |||||||||||| Sbjct 329 ACTTCTTTCACGCGGGTTACTGATCGTTTAGTTGGATTGATAGATGAACCCTGATACCAA 270 Query 112217 CGAGACTCTGAATCCAGCACTTTGTCAACAACTGCCTCCGATTTGGGTAGAATAGCGTCG 112276 || || || | || || || ||||| ||||| || ||||| | |||| || || Sbjct 269 CGTGATTCATCACTCAAAACGTTATCAACGACTGCTTCTGATTT---TGGAATTACGACG 213 Query 112277 ---AAACAGGTTTTACCCATACTGTCTTTCATGTGTGACCAGATAGACAGTGAGAAACGT 112333 | ||| |||| ||||| |||||||| || |||||||| || | ||| |||||| Sbjct 212 GTCATACAAGTTTCGCCCATGCTGTCTTTGATATGTGACCAAATGTCTAATGAAAAACGT 153 Query 112334 TCGATCTTGTTACAGACTTTTACC 112357 || ||||| ||||| ||||| ||| Sbjct 152 TCAATCTTATTACATACTTTAACC 129 >seq36028 Length=2231 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/202 (71%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 40658 GGCGATCTCGTACATTTCGGAATCATCTTCTGCATTCTGCCAAGCACGAATCAGA---TA 40714 ||| || || | |||||| | ||| ||||| | | || |||| || |||| | Sbjct 671 GGCAATTTCTTTCATTTCAGGATCGTCTTCACCGGTGCGC--AGCA-GATTCAGCATGTG 615 Query 40715 CTGGGTGCCTTTCAGGTGAAGCTGTTCATCCCGCGCAATCAGACGCATGATCTTAGCGTT 40774 ||||||||| ||||||| || ||| || || |||||||| ||||| || ||||| Sbjct 614 CTGGGTGCCGGTCAGGTGCAGAGCTTCGTCGCGTGCAATCAGCTTGATGATTTTGGCGTT 555 Query 40775 GCCTTCCATGATACCACGCTCACCGAATGAGAACGTGCAAGCAAAGCTAACATAGAAACG 40834 ||||||||| | | |||||| | || | || | ||| |||||||| || ||||| || Sbjct 554 GCCTTCCATCAGTTCTCGCTCAGCAAACGCAAAAGAGCAGGCAAAGCTGACGTAGAAGCG 495 Query 40835 AATCGCTTCCAAAGCGTTTACG 40856 |||||||||| || || ||| Sbjct 494 GATCGCTTCCAGCGCATTGACG 473 >seq52264 Length=2351 Score = 93.3 bits (102), Expect = 6e-14 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 109245 TTTGGCAGGGGATGTAAGAATCGAA-CTCACGTCAACGGATTTGGAATCCGCCGCATAAC 109303 |||| |||||| |||| |||||||| | ||| ||||||||||||||||||| |||||||| Sbjct 1610 TTTGTCAGGGGTTGTAGGAATCGAAACCCACCTCAACGGATTTGGAATCCGTCGCATAAC 1551 Query 109304 CATTTTGCTAATCCCCTATAT 109324 | |||||||| |||||| || Sbjct 1550 CGCTTTGCTAAACCCCTAGAT 1530 >seq74161 Length=667 Score = 86.0 bits (94), Expect = 9e-12 Identities = 188/274 (69%), Gaps = 6/274 (2%) Strand=Plus/Minus Query 41070 ATGATGTGGGTATAAGAACGGCTATGAATTGTCTCACTGAAACTCCATGTGGTGATCCAA 41129 |||||||| || ||| | ||| ||||||||||| ||| |||||| |||||| Sbjct 481 ATGATGTGAGTGTAACTTCTGCTGTGAATTGTCTCGGAGAATGACCATGTTTCAATCCAA 422 Query 41130 GTTTCAAGCGC-GACATCAGATACGATTGGCAAG-AATACCAAGTTAGGTGCGCGACCTT 41187 |||||||| | | || ||| | ||| |||| ||| | ||| |||| |||||||| Sbjct 421 GTTTCAAGTTCCGGCAA-AGAAATAATTC-CAAGTAATGCTTGGTTGGGTGAGCGACCTT 364 Query 41188 GTACCGAGTCAAGCAGACTTTGATATTTCAAGTTTTGAGTGAAAACATGTTGTTCG-GCT 41246 | || || | | | ||||||||||||| |||| |||| ||| | ||| ||| Sbjct 363 GCACACTATCTAATAAAATTTGATATTTCAAATTTTCTAAAAAAATATGCTTTTCATGCT 304 Query 41247 TCACTCAGTTGATTATAGTCGATTGCATCCTTAGACAAATCCACTTCTTCGGGACGCCAG 41306 || || || | | || || ||| | || | || | |||||| ||||||||| Sbjct 303 CTTCTGCATTCATGAAA-TCTTTTCTATCGCTTGAAAGCTCAATTTCTTCTGGACGCCAG 245 Query 41307 AAAAATGAAAGTTGCTTTTCTGTAAGCTTATCAA 41340 || ||||| | ||||||||| | ||||| |||| Sbjct 244 AAGAATGATAATTGCTTTTCAATTAGCTTCTCAA 211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745005392872000