Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_005262.3 Length=63882 Score E Sequences producing significant alignments: (Bits) Value seq94163 147 9e-31 seq70091 116 2e-21 seq16638 95.1 5e-15 >seq94163 Length=686 Score = 147 bits (162), Expect = 9e-31 Identities = 263/372 (71%), Gaps = 14/372 (4%) Strand=Plus/Plus Query 13541 TACGGAAGCGTGTGCAGCGGCATCGAGGCCGCGACCGTTGCTTGGCATCCGCTCGGC-TG 13599 |||||| || || |||||||||||||| || || || || ||||| ||||| ||| || Sbjct 302 TACGGATCGGTCTGTAGCGGCATCGAGGCTGCTACGGTCGCCTGGCACCCGCTGGGCATG 361 Query 13600 GAAGCCGGCGTGGTTCGCTGAGATCGAGAAATTCCCTAGCGCCGTGCTGGCGCATCATTA 13659 ||| || |||| ||| |||||||| ||||| |||||||| ||||||| | || Sbjct 362 CGTGCC-GCCTGGTACGCCGAGATCGAAGCCTTCCCCAGCGCCGTCTTGGCGCACCGGTA 420 Query 13660 CCCCGATGTTCCTAACCTTGGAGACATGACGAAGATCACGCGCGC-GGTGCTGGCGCGTG 13718 || || | || || || |||||||| || | ||| | |||||| || | Sbjct 421 TCCGGAGACCACCAATCTAGGCGACATGACTCGCCTCGC-CGCCCAGGTGCTAGCTGGAA 479 Query 13719 AGGTCGAAGTGCCTGACGTGCTGGTCGGTGGCACGCCGTGCCAGGCATTCAGCCTCGCGG 13778 || |||| | ||| ||||| ||||||| |||||||| ||||| || |||||| | |||| Sbjct 480 AGATCGAGGCGCCGGACGTCTTGGTCGGCGGCACGCCCTGCCA-GCCTTCAGCGTGGCGG 538 Query 13779 GTCTGCGTGAATCCCTCTCGGATGAGCGCGGGAATCTTACTTTGAAATTCGTTGAGTTGA 13838 | |||| ||| ||| | ||| |||||| || || | |||| ||| ||| | Sbjct 539 GCATGCGCGAAGGCCTGGCCGATCCGCGCGGCGCCCTCACCAT-AAATACGTGGAGCTCG 597 Query 13839 TCGATGCAATTGACCATGTTCGGCGACTCGATGGCG--CAG-CACCGGCCGTCGTCGTCT 13895 |||||||||||||||||| ||| || | ||| ||| || | ||||| ||||| Sbjct 598 CAGATGCAATTGACCATGTT---CGAGTCCAGCGCGGACAGCCAGAGAGCGTCGCCGTCT 654 Query 13896 GGGAAAACGTCC 13907 || |||||||| Sbjct 655 GG--AAACGTCC 664 >seq70091 Length=496 Score = 116 bits (128), Expect = 2e-21 Identities = 153/206 (74%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 13986 CACCAGGGGGCCGGTGGGCGAACGCTGGTTGTGTGTATGGACCCCAGCGTGC-AGTCGCT 14044 |||||||| | ||| | |||||||||| |||| ||||| | | || ||| || Sbjct 8 CACCAGGGCGAAAATGGTCAAACGCTGGTTATGTGCTGGGACCAAAA-GAGCTAGTTGCC 66 Query 14045 TGGCGGACCCTGGACGCCCAATATTTCGGAGTGGCCCAACGCCGCCGCCGTGTGTTCGTT 14104 ||||| | ||||| |||| |||||| ||||||||||| ||| ||||||||||||| Sbjct 67 TGGCGAGTGC--GACGCTCAATTTTTCGGCGTGGCCCAACGACGCAACCGTGTGTTCGTT 124 Query 14105 GTCGCAAGTGGTCGAGACTG-GTTCGATCCCACACCGGTACTTTTTGAGTGGGATGGCGT 14163 |||||||||| |||| || | ||||||||| || || | ||||||| || || | Sbjct 125 GTCGCAAGTGCTCGA-ACAGACTTCGATCCCGCAAAAATATTATTTGAGTCCGACAGCAT 183 Query 14164 GCGCCGGGATTGTCCGCCGCGCCGAG 14189 ||||||| ||| | ||||| || ||| Sbjct 184 GCGCCGGAATTCTGCGCCGTGCAGAG 209 >seq16638 Length=4153 Score = 95.1 bits (104), Expect = 5e-15 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 10290 ACTGAATGGCACCGCGTCTCGTTCTTCGGTCGGCTGGCTGAGATCGTCGACGAGCACCTG 10349 || |||||||||||||| |||||||||||| || || ||||||| || |||| || | Sbjct 4116 ACCGAATGGCACCGCGTGGTGTTCTTCGGTCGTCTCGCCGAGATCGCCGGCGAGTACATC 4057 Query 10350 CGCAAGGGCGCATCTGTCTACATCGAGGGGCGCATCAAGACGCGGAAGTGGCAGGATCAA 10409 ||||||||| | ||||| ||||||| | || || || ||||||| || Sbjct 4056 CGCAAGGGCTCCCAGGTCTATGTCGAGGGCACTCTGCGTACCCGCAAATGGCAGGGCCAG 3997 Query 10410 TCCGGCCAGGATCGTTACACGACCGAGATCGT 10441 ||| |||||||| ||||| ||||| ||||| Sbjct 3996 GACGGTCAGGATCGCTACACCACCGAAATCGT 3965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203973169026900