Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_005859.1 Length=121750 Score E Sequences producing significant alignments: (Bits) Value seq33499 594 4e-165 seq33108 86.0 5e-12 >seq33499 Length=26748 Score = 594 bits (658), Expect = 4e-165 Identities = 643/851 (76%), Gaps = 6/851 (1%) Strand=Plus/Minus Query 39791 TTACTTGTTACGCATATCCATAATCATCTGGCCATCGTAACCAGTGCCAACTACTGTTTG 39850 ||| |||||||| ||||||||||| || || ||||| || |||| |||||||| Sbjct 24100 TTATTTGTTACGAGCATCCATAATCAACTTACCTTCGTAGTCACCACCAATAACTGTTTG 24041 Query 39851 CGGTACACCACCTTGATATTTCTGAGCACGAATCATTTCAACTTCTAGTTGTTTCCAGCG 39910 |||||||||||||| ||||||| |||||| ||||||||||||| ||||||||||| || Sbjct 24040 TGGTACACCACCTTGGTATTTCTCAGCACGTTTCATTTCAACTTCGAGTTGTTTCCAACG 23981 Query 39911 AATCATCTCAGGAGTAATAGTACGTTGCAGAGCGGCGTTAGCTTCGGCTTCTTTGTTAGC 39970 ||||||||| ||||| || || |||| | ||||||||| |||||||| | ||| Sbjct 23980 AATCATCTCTGGAGTGATTGTTTTCTGCAACACACTGTTAGCTTCAGCTTCTTTTTGAGC 23921 Query 39971 TGCGTACAGTTTAGCATCTGCATCACGTTCGTTTGCAATAGCCTGGTTGTTACGAGCTTC 40030 || || | ||||||||||||||| ||||||||||| || | || ||||| ||||| Sbjct 23920 AGCATATAATTTAGCATCTGCATCTCGTTCGTTTGCCTGGGCTTCATTATTACGGGCTTC 23861 Query 40031 ACGATCTGCTTCTGCTTGTTTAACCTTCTGCTGTGCTTCTTGTTCAACACGAGCCAATTC 40090 ||||| || ||||| | ||||| ||||||| ||||| | || || ||| || Sbjct 23860 TCGATCAGCCTCTGCCTTCTTAACTGCTTGCTGTGTTTCTTTAGCTACTCGGTCCAGATC 23801 Query 40091 AGCTTTCGCAGCATTAACTTGTTCTTCACGAACTTTGGTATTCTGTACCTGTTCCATGAT 40150 ||| | || || ||||| ||||||||||||| || ||||| |||||| | |||||| Sbjct 23800 AGCCTGTGCTGCGTTAACCTGTTCTTCACGAATCTTTGTATTTGTTACCTGCTTCATGAT 23741 Query 40151 TACAGGCGGCAAAGTAATATCCTGAAGGAACACTTGCTTAACTGTGTAACCATAAGGGCG 40210 |||| ||||| || ||||| || | ||| | || || || || ||||||||||| || Sbjct 23740 TACATCAGGCAAGGTGATATCTTGCAAGAAGATTTCTTTTACAGTATAACCATAAGGACG 23681 Query 40211 TGCGTACTCTTCAACTTCCTGCTGAATTGCAGTTTGCAATTGTGCTTGAATTTTAGCATC 40270 |||||| |||||| ||| | | || | ||||| || || ||||| | ||| | Sbjct 23680 TGCGTAGGCTTCAATTTCAGCTTTTACTGAATCCTGCAACTGCGCCTGAATCTCAGCGTT 23621 Query 40271 AAACAAATCTTGTGCTTTAGGTACAGACTTACCAAACTCACGAATAGTAGAT---AGTAA 40327 |||||||| |||||||| || || || ||||||||||| || | ||| ||| || Sbjct 23620 GAACAAATCCTGTGCTTTCGGGACTGATTTACCAAACTCTCGGACAGTGGATAAAAGCTT 23561 Query 40328 TTTCTCAGTTACATACTTATCTAGAGCCTGATCCTGAGTACCTGCGTTAATACGGTTAAT 40387 || |||| ||||| ||||| ||||| || || ||||| ||||| ||||| ||||| || Sbjct 23560 TTGCTCA---ACATATTTATCCAGAGCTTGCTCTTGAGTGCCTGCATTAATTCGGTTCAT 23504 Query 40388 CGGTGCCTTAGAACCATCAAACTGCAACATAACAGTCAGGTCAACAGTGGATTTAAACTT 40447 |||||||||||||||||||||||||||||||| |||| || || || ||||||||||| Sbjct 23503 AGGTGCCTTAGAACCATCAAACTGCAACATAACGGTCATATCCACTGTTGATTTAAACTT 23444 Query 40448 ATCCTGGCTGGGAACCTGAAGTTTATCTAATTTTACAGCAATATCTTTTGTACTAAAAGT 40507 |||||| || || || || | |||||| || ||| |||||||||||||| ||||| Sbjct 23443 ATCCTGACTCGGTACTTGCAATTTATCATATGTTATTTTGATATCTTTTGTACTGAAAGT 23384 Query 40508 ATCGAAAGATGCAAATGGGTTTACAAGATGGAAACCAGGTAATACTGGGTTAGGATCTAC 40567 || || |||||||||||| || | |||||| || || ||| || ||||||| || Sbjct 23383 CTCAAAGCTTGCAAATGGGTTAACCACATGGAACCCTGGCTTTACAGGATTAGGATTAAC 23324 Query 40568 TTTACCCAGAAATGTTTGGGTTTTAACCGTACCATCAGAAACAATAGTATATGAATTAAA 40627 |||||||| ||| ||||| ||||| || |||||||| || || |||| ||||| | Sbjct 23323 TTTACCCATAAAGGTTTGTGTTTTTACTGTACCATCTTGCACGATGATATAGGAATTTAG 23264 Query 40628 AGCTAGGATTA 40638 ||| | ||||| Sbjct 23263 AGCCAAGATTA 23253 >seq33108 Length=3479 Score = 86.0 bits (94), Expect = 5e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 27669 GTAAATGTACGACTAATAACGTCGTTCTGCTGTTCACGCGTCAGTGCGTTAAAACGCACA 27728 ||||| ||||| ||| ||||| ||| |||||| ||||||| | ||||| ||||| Sbjct 2955 GTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGAATTAAAGCGCACG 2896 Query 27729 GCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCAGGATGTTTCTGTGCATCC 27788 || ||||| |||||||| || || | || || || || |||||||||||| || || Sbjct 2895 GCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATGTTTCACGGCGTCT 2836 Query 27789 AAAAGCTGATCACGACTTAACACATTGACATTTAGGTGTTGACCACCTTC 27838 ||| ||||| | | || || || |||| ||| || || ||||| Sbjct 2835 TCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCCTTC 2786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 388856701211300