Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_005882.1 Length=36748 Score E Sequences producing significant alignments: (Bits) Value seq120846 116 9e-22 seq88192 116 9e-22 seq34670 95.1 3e-15 >seq120846 Length=363 Score = 116 bits (128), Expect = 9e-22 Identities = 229/329 (70%), Gaps = 15/329 (5%) Strand=Plus/Minus Query 15253 TCGTACAACGGCGAGGACTTCGGACGGACTGGCGACCTGACGGTCCACGTGCCGCTGATC 15312 |||| | | ||| |||||||| || | |||||||| ||||| | ||||||||| Sbjct 321 TCGTTCTATGGCATGGACTTCGCCCGATCAGGCGACCTCTCGGTCATCTGGCCGCTGATA 262 Query 15313 GAACAACAGAACCT--GGTTCGCCGCGTGCCGTTCATCGTCGAGCTGCGCAACGTGCCGT 15370 || ||| | | | |||||| || || | |||||||||||||||||| || | Sbjct 261 AAAACGCAGGATTTACGCAAGGCCGCG--CCCTTTACCGTCGAGCTGCGCAACGTACCCT 204 Query 15371 TCCGGCAGCAGGAGCAGATCGCCTTCTACCTGCTTGATCGGCTCCCGCGC---TTCACGG 15427 | | ||||| ||||||||| |||||||||| | |||| || || | ||| Sbjct 203 TAAG-CAGCAAGAGCAGATCCTCTTCTACCTGGTG---CGGCGCCTGCCCAATTTCCTCA 148 Query 15428 GCGGCGCCTTCGACGCGCGGGGCAACGGCCAATACCTCGCAGAAGTCGCGATGCAG-CGC 15486 |||||| ||| || || || |||||||| | |||| ||| |||| ||| | || Sbjct 147 AGGGCGCCCACGATGCCCGAGGTAACGGCCAGCAGATCGCCGAAA-CGCGCTGCCGTCGA 89 Query 15487 -TACGGCGCATCGCGCATCCAGCAAGTGATGCTGTCCGAGTCGTGGTATCGCGAGCACAT 15545 | ||| |||||| ||||||| |||||| ||||| | ||||||||||| |||| Sbjct 88 ATTTGGCTATAACCGCATCGAGCAAGTCATGCTGACCGAGGC-TGGTATCGCGACAACAT 30 Query 15546 GCCGCCCGTGAAGGCGGCGTTCGAAGACG 15574 ||| || | ||||| ||| | ||||||| Sbjct 29 GCCCCCGTTCAAGGCCGCGCTGGAAGACG 1 >seq88192 Length=597 Score = 116 bits (128), Expect = 9e-22 Identities = 190/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 14703 CAACCTGCGCGGCAAGCAAGGCCGCGTGATCATCGACGAGGCAGCGTTCCACGAGCAGCT 14762 ||||||||| ||| || ||| ||| | ||||||||||| || ||||| | | || Sbjct 465 CAACCTGCGGGGCCGTCAGGGCATCGTCGTAATCGACGAGGCGGCCTTCCATGCAGACCT 406 Query 14763 CGGCGAGCTGCTCAAGGCCGCGATGGCGCTGCTGATGTGGGGCGGTCAGGTTCACATCAT 14822 | ||||||||| ||||| || ||||||| |||| ||||| || |||| || |||| Sbjct 405 GGCCGAGCTGCTGAAGGCGGCCTTGGCGCTCTTGATCTGGGGTGGCGAGGTCCATGTCAT 346 Query 14823 TTCGACGCACGACGGCGTCGACAACGCGTTCAATGAGCTGGTCACGGACGTCCGTTCCGG 14882 || ||||||||| ||| ||||| |||||||||||| || || |||| | || Sbjct 345 CAGCACCCACGACGGCACCGAGAACGCCTTCAATGAGCTGATCGAAGAGATCCGCGCGGG 286 Query 14883 CAAGAAGCCCTACAGCCTGCAT---CGCATCACGTTCGCCGACGCAGTCCAGGACGGGCT 14939 | |||| | | || || | ||| ||| ||| ||| || || ||||| || Sbjct 285 C---AAGCGCAAGGGCGTGGTTTTCCGCTGCACCTTCCGCGAAGCGGTAGCCGACGGTCT 229 Query 14940 CT-ACCAGCGCATTTGCC-TGCGCAAGGGC 14967 || | |||||| | |||| ||||||||||| Sbjct 228 CTAATCAGCGCGTGTGCCTTGCGCAAGGGC 199 >seq34670 Length=3136 Score = 95.1 bits (104), Expect = 3e-15 Identities = 123/169 (73%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 2696 CGGTTTTCGGGCTTGTGGTCCGGACGCTGCGCATTGAAGGCCAGTTTCTCAACGATCGCG 2755 ||||||||| |||||||||| | || ||||| ||| ||||||| ||||| || | ||| Sbjct 1843 CGGTTTTCGCGCTTGTGGTCGGCCCGTTGCGCGTTGTAGGCCAGCTTCTCTACCACCGCA 1784 Query 2756 CCAGCTACGTCGTATTGCTTCGCGC---CGGCCAGGTCGAATATCCGAATCACCGCGTCC 2812 ||| ||||||| ||||| | | ||| || | ||||| || | ||||| Sbjct 1783 CCACCTACGTCCA---GCTTCAGGAAAGCAGCCGTATCCAGAATCCGGATAATGGCGTCA 1727 Query 2813 GCGAGTTCGACTTCGATCATCGGGCGATGGGGAAGCTTGTCGTCCATCA 2861 || ||||| || ||||||||| |||| | || || | ||||||||||| Sbjct 1726 GCCAGTTCTACCTCGATCATCTGGCGGTTCGGCAGGTGGTCGTCCATCA 1678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117290234106000