Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_005886.2 Length=47399 Score E Sequences producing significant alignments: (Bits) Value seq34527 122 3e-23 seq34670 113 1e-20 seq56906 100 9e-17 >seq34527 Length=8391 Score = 122 bits (134), Expect = 3e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46908 GCATTCGGAACTGTCCGAAGCACTCGAAGGACATCGCAAGGGGTTGATGGATGACCATCT 46967 ||| || ||||| || ||||| || || || || ||| ||||||||||||| || Sbjct 6678 GCACTCCGAACTATCGGAAGCGCTGGAGGGTATGCGTAAGAACCTGATGGATGACCACCT 6737 Query 46968 TCCGCATCGTCCGATGATCGAGGTCGAACTTGCTGATGCGATCATTCGCATTGCCGATCT 47027 ||| | || | |||||||||||| ||||| ||||| ||||| || |||||| ||| Sbjct 6738 GCCGAAGCGCCAGATGATCGAGGTAGAACTGGCTGACGCGATTATCCGCATTCTGGATAC 6797 Query 47028 GGCCGGCGCGCTAAATCTTGATCTTGGTGGTGCGATCGCTGAGAAGCTGGCATACAACGC 47087 ||| | || || || || | ||||||||| | | ||||||||||| |||||||| Sbjct 6798 GGCTGCTTTCCTGAAGCTGGACGTAGGTGGTGCGGTGGTAGAGAAGCTGGCCTACAACGC 6857 Query 47088 CAACCGTGCGGATCACAAGCCCGAAAACCG 47117 | || | || ||||||| ||||||||| Sbjct 6858 GCAACGATCTGACCACAAGCGCGAAAACCG 6887 >seq34670 Length=3136 Score = 113 bits (124), Expect = 1e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46908 GCATTCGGAACTGTCCGAAGCACTCGAAGGACATCGCAAGGGGTTGATGGATGACCATCT 46967 ||| || ||||| || ||||| || || || || ||| ||||||| ||||| || Sbjct 1634 GCACTCCGAACTATCGGAAGCGCTGGAGGGTATGCGTAAGAACCTGATGGACGACCACCT 1693 Query 46968 TCCGCATCGTCCGATGATCGAGGTCGAACTTGCTGATGCGATCATTCGCATTGCCGATCT 47027 ||| | || | |||||||||||| ||||| ||||| || || || || ||| ||| Sbjct 1694 GCCGAACCGCCAGATGATCGAGGTAGAACTGGCTGACGCCATTATCCGGATTCTGGATAC 1753 Query 47028 GGCCGGCGCGCTAAATCTTGATCTTGGTGGTGCGATCGCTGAGAAGCTGGCATACAACGC 47087 ||| | || || || || | ||||||||| | | ||||||||||| |||||||| Sbjct 1754 GGCTGCTTTCCTGAAGCTGGACGTAGGTGGTGCGGTGGTAGAGAAGCTGGCCTACAACGC 1813 Query 47088 CAACCGTGCGGATCACAAGCCCGAAAACCG 47117 | || || || ||||||| ||||||||| Sbjct 1814 GCAACGGGCCGACCACAAGCGCGAAAACCG 1843 >seq56906 Length=1235 Score = 100 bits (110), Expect = 9e-17 Identities = 188/268 (70%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 23798 GGATGCCGAGTCGCGAACCGAACGCGTTCATATCCTTGCCTTCGTCGGCAACGTCAA--G 23855 ||| ||| | |||||| ||| ||||| ||||| ||| |||||||| || || | | Sbjct 344 GGAAGCCATGGCGCGAAGAGAAGGCGTTTTTATCCCGGCCCTCGTCGGCCACATCCATGG 285 Query 23856 CGATGAGAACCGCTGCCCCGTGACA-GTAAGCCCAAGTTTCACATCCGCATCGATCGCGG 23914 || || |||| || ||| | | | ||||| | | | || ||||||||| || | Sbjct 284 CGCCCAGG--CGCTTGCCAGTGGGATGGATGCCCA-GATGGATATGCGCATCGATAGCAG 228 Query 23915 CATCGATCCATTCGAGCGGGATAAGCACACCCTCAGCGGATGCGCTGTAGTCGATGTCGA 23974 | | | ||||||| |||||| ||||| || ||||| |||||| |||| || ||| | Sbjct 227 CCTGCACCCATTCGCTCGGGATCAGCACGCCTTCAGCCGATGCGGCATAGTTGAGGTCCA 168 Query 23975 TTTCCTGTGCGACGACGAGCGCATTG--AAT-TTCTGTTTCTGCTTCTTATACCACTCGT 24031 |||||| || ||||| | || || ||| |||| || ||| |||||||||| Sbjct 167 GTTCCTGAGCAACGACCACCGGGTTATCAATCTTCTCGCACT-CTTGCGGTACCACTCGT 109 Query 24032 CATCTTTGCGCGGATCGTCGCGCCAATG 24059 |||| |||||||| ||| |||||| || Sbjct 108 CATCCTTGCGCGGGTCGCTGCGCCAGTG 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151320696744600