Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_005887.1 Length=42415 Score E Sequences producing significant alignments: (Bits) Value seq61204 266 9e-67 seq30007 149 2e-31 seq38429 120 8e-23 seq68955 111 4e-20 >seq61204 Length=720 Score = 266 bits (294), Expect = 9e-67 Identities = 362/504 (72%), Gaps = 12/504 (2%) Strand=Plus/Plus Query 32036 GTTGGCGTAGGCCAGCCAGAACGTTCGATCTCGGATGTGCGGGGCACCGACGCCCGCAGA 32095 || || ||||||||||||| | | ||| || | ||| ||||| |||||||||| ||| | Sbjct 210 GTCGGAGTAGGCCAGCCAGTAAGCTCGCTCCCTGATATGCGGCGCACCGACGCTCGCTGC 269 Query 32096 CGGAAACGGGACACACCCATAGGCGTAGTCCAGCGCTTCCACGTCAGTTTGTACAAGGTC 32155 || ||||| | |||| ||||||| ||| |||||| || |||||||||||||| Sbjct 270 CGTGAACGGCGTAATCCCAAAGGCGTATCCCATTCCTTCCAGATCTGTTTGTACAAGGTC 329 Query 32156 GATCCA-GTCGTCGACAGCGCTGCTCGCAACCTGTTCTCCAAACACCA-CTGCAGGTCGG 32213 || ||| | | | ||||| ||||| ||||| ||||| || ||| ||| | Sbjct 330 GAACCAAGAATTTGCGTTACCTGCT-GCAACTTGTTCGCCAAATACGTGCTG-AGGCTTG 387 Query 32214 CGCTCAGCGATGAGCCAGTGCCAGTGC-GGCCAGAGGTGCCGCTCGTCATCAAACCCGCC 32272 | || | |||||||| || | ||| ||||| ||||||||||||||||||||||| | Sbjct 388 CACTTTTCAATGAGCCACTGGAA-TGCTGGCCATAGGTGCCGCTCGTCATCAAACCCAGC 446 Query 32273 ACCTTTGCCTGCCGCGGAGAAAGGTTGGCACGGGCATGATCCGGTCCACACGGGGCGATC 32332 || ||||||| ||||||||||||||| || || || |||||||| || || ||||| Sbjct 447 TCCCGCGCCTGCCTGGGAGAAAGGTTGGCAAGGACAGGAACCGGTCCAAACAGGTCGATC 506 Query 32333 GTCGGGCCAGCCGGCGCGCCGCAGTGCGTAGGACCACACGCCGATGCCGGCGAAGAAATG 32392 || ||||||||||| || || || |||||||||||||| |||||||||||||||||||| Sbjct 507 ATCTGGCCAGCCGGCACGGCGAAGAGCGTAGGACCACACCCCGATGCCGGCGAAGAAATG 566 Query 32393 GCACTGGCTGTATCCGCGC---AGGTCATCAGGTTGGACATCCTCGATACTCCTTTCGTC 32449 ||| ||| |||| | || ||||| | ||| | ||||| || ||| ||||| Sbjct 567 GCATTGGGTGTA---GGGCTTGAGGTCGTTTGGTCGAACATCGCGAATGTCCCTCTCGTC 623 Query 32450 GACGTGGCCGGNNNNNNNNNNNNNNNNNNNNNNNNGGTTGCGCAGCCACTGCGCGGCGTG 32509 |||| ||| | || ||||||||||| || || | Sbjct 624 TACGTCGCCAGGCGCTATGTGCCCCGCGGAAATTAGGGTGCGCAGCCACGCGGCCGCATA 683 Query 32510 CGGATCGATCTCGTTGTAGTAGGC 32533 ||| |||||||||||||||||||| Sbjct 684 CGGGTCGATCTCGTTGTAGTAGGC 707 >seq30007 Length=31646 Score = 149 bits (164), Expect = 2e-31 Identities = 121/147 (82%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 31584 GCGTTTCCGTAGGCGCGCAGTCGTCCCACTCGACCGGGAGCCCCATGAGCCAGCGGGAAT 31643 || || || || |||||| ||||||||||| ||||| ||||||||||||||||||| Sbjct 3358 GCATTGCCATAACCGCGCAATCGTCCCACTCTGGCGGGAATCCCATGAGCCAGCGGGAAT 3299 Query 31644 GTGCCGGGTTCAACTGGCCGCCACTTTCCATCCCGGCAGAGCAGCCAGTCAGCATCGCGC 31703 |||||||||||||||||||| |||||||||||||||| |||||||||||||| | Sbjct 3298 GTGCCGGGTTCAACTGGCCGTAACTTTCCATCCCGGCATCCGAGCCAGTCAGCATCTGAC 3239 Query 31704 CAGAAGCCGTTAGCCGGGCCGGCTGGT 31730 |||||||| | | ||| |||||||| Sbjct 3238 CAGAAGCCTTGATGCGGATCGGCTGGT 3212 >seq38429 Length=1166 Score = 120 bits (132), Expect = 8e-23 Identities = 86/99 (87%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 31584 GCGTTTCCGTAGGCGCGCAGTCGTCCCACTCGACCGGGAGCCCCATGAGCCAGCGGGAAT 31643 || || ||||| |||||||||||||||||| ||||| ||||||||||| ||||||| Sbjct 106 GCATTGCCGTAACCGCGCAGTCGTCCCACTCTGGCGGGAATCCCATGAGCCAACGGGAAT 47 Query 31644 GTGCCGGGTTCAACTGGCCGCCACTTTCCATCCCGGCAG 31682 ||||||| |||||||||||| ||||||||||||||||| Sbjct 46 GTGCCGGATTCAACTGGCCGGAACTTTCCATCCCGGCAG 8 >seq68955 Length=479 Score = 111 bits (122), Expect = 4e-20 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33473 CGATCCTCGACGAGCTTCGCGTAGCCGATGATGTCGTGCCAGTTGTCGACGTAATCCGGA 33532 || |||||||| ||||| || ||||| ||||||||||||||||||| | || | ||| Sbjct 164 CGGTCCTCGACCAGCTTTGCATAGCCCTGGATGTCGTGCCAGTTGTCGGCATAGTTGGGA 105 Query 33533 TCGCCGTTCAGCATCCGCGCGATCTTGTCGGCGATCACCGTGAGCGCCTGCTTCTGGTCG 33592 ||||| ||| || ||||||||||||||| ||||||||||||||| || |||| || Sbjct 104 TCGCCAGACAGGATGCGCGCGATCTTGTCGCAGATCACCGTGAGCGCTTGACGCTGGGCG 45 Query 33593 G 33593 | Sbjct 44 G 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135396574522200