Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_006548.1 Length=38439 Score E Sequences producing significant alignments: (Bits) Value seq50247 681 0.0 seq60211 145 2e-30 seq42978 89.7 1e-13 >seq50247 Length=1652 Score = 681 bits (754), Expect = 0.0 Identities = 614/766 (80%), Gaps = 8/766 (1%) Strand=Plus/Plus Query 26018 ATGTCCGCCCAGCCCATCATCCCCTGGATAGGGGGAAAGCGCCGCCTCGCTGACCGCATC 26077 |||||||| | | ||||| |||||||| || || |||||||| ||||| ||||| ||| Sbjct 675 ATGTCCGCACCG---ATCATTCCCTGGATGGGCGGCAAGCGCCGTCTCGCCGACCGAATC 731 Query 26078 TTCCCGCTTTTCCCACGCCACTCCTGCTATGTCGAGCCTTTCGCAGGTGGGGCGGCACTG 26137 |||||||| ||||| ||| |||||| |||||||| ||||| || || || || || Sbjct 732 TTCCCGCTGTTCCCCAAGCACAGCTGCTACGTCGAGCCCTTCGCCGG-GGCGCCGCGTTG 790 Query 26138 TTCTTCCTACGGCCGGTGCCGGCGGATGTGGAAGTGCTCAACGACATCAACGGCGACCTG 26197 |||||||| || ||||| || || || ||||| |||||||||||| |||||||||||||| Sbjct 791 TTCTTCCTTCGCCCGGTACCCGCCGAGGTGGAGGTGCTCAACGACGTCAACGGCGACCTG 850 Query 26198 GTCAACCTGTACCGCGTCGTTCAGCATCATCTGGAAGAGTTCGTCCGCCAGTTCAAATGG 26257 ||||| || ||||| ||||| ||||| || ||||| |||||||||||||||||||| ||| Sbjct 851 GTCAATCTCTACCGGGTCGTCCAGCACCACCTGGAGGAGTTCGTCCGCCAGTTCAAGTGG 910 Query 26258 GCGCTCAGCTCTCGCCAGGTCTTCAAGTGGCTGCAGGAGACCCGGCCGGAAACGCTGACC 26317 ||||| ||||| |||||||||||||| ||||||||| ||| ||||| ||||||||| Sbjct 911 GCGCTGAGCTCCCGCCAGGTCTTCAAATGGCTGCAGATGACGAACCCGGAGACGCTGACC 970 Query 26318 GACATCCAGCGCGCCGCGCGCTTTTACTACCTGCAGCAGAGCGCGTTCGGCGGCCGGGTC 26377 ||||||||||||||||| ||||| ||||||||||||||| || || || ||| |||| Sbjct 971 GACATCCAGCGCGCCGCACGCTTCTACTACCTGCAGCAGTCGGCCTTTGGTGGCAAGGTC 1030 Query 26378 GATGGCCAGAGCTACGGAACCGCCACCACCTCACCGCCTGGGCTCAACCTGTTGCGCCTG 26437 | ||||||| | ||| |||||||| ||| | |||||||| || |||||| ||||||| Sbjct 1031 GCCGGCCAGACGTTCGGTACCGCCACGACCACGCCGCCTGGCCTGAACCTGCTGCGCCTC 1090 Query 26438 GAAGAAACACTGTCGGCGGCTCACCTGCGGCTGAGCAATACCTACATCGAGCACCTCAGC 26497 || || || |||||||| || |||||||| || | | ||| |||||||||| | Sbjct 1091 GAGGAGACCCTGTCGGCTGCGCACCTGCGCCTATCCGAGGTCTATGTCGAGCACCTGGCC 1150 Query 26498 TGGCAGGACTGCCTCCGGCGCTATGATCGAGAGCACACCCTCTTTTATATGGACCCGCCG 26557 |||||||||||| | || || || || |||||||| ||||| || ||||||||||| Sbjct 1151 TGGCAGGACTGCATGCGCAAATACGACCGGGAGCACACGCTCTTCTACATGGACCCGCCC 1210 Query 26558 TACTGGGAGACGGAGGGCTATGGCGTGCCATTCGGCTTCGAGCAGTACCAGGAGATGGCA 26617 |||||||||||||| || || ||| |||| ||||||||||||||||| |||||||||| Sbjct 1211 TACTGGGAGACGGAAGGGTACGGCATGCCCTTCGGCTTCGAGCAGTATGAGGAGATGGCC 1270 Query 26618 GTGATGTTCCGCCAACTCAAGGGCAAGGCCATCATCAGCCTGAACGACCACCCCGAGATC 26677 |||| | |||| |||||||||||||| ||||||||||| ||||| ||||| | ||| Sbjct 1271 CGGATGCTGGGCCAGCTCAAGGGCAAGGCGATCATCAGCCTCAACGATCACCCGGCCATC 1330 Query 26678 CGGGAGTGCTTCGCCTCTTTCCACATCGAGTCGACCGACATCACCTACACGGTCGGAGGT 26737 || ||||||||| | |||| |||||| ||||||| |||| ||||||||| || ||| Sbjct 1331 CGCGAGTGCTTCAAGGCGTTCCGGATCGAGGCGACCGAGATCAACTACACGGTGGGCGGT 1390 Query 26738 GGCCAAGGTTCGGCA--GCACGGGAAGTGCTGATCTTTTCCTGGGA 26781 || ||||| | ||| || |||| ||||||||||| |||||| Sbjct 1391 GG-CAAGG-GCAGCAAGGCTGGGGAGGTGCTGATCTTCAGCTGGGA 1434 >seq60211 Length=495 Score = 145 bits (160), Expect = 2e-30 Identities = 300/438 (68%), Gaps = 19/438 (4%) Strand=Plus/Minus Query 16765 GCGCCGACAACGACGATGAGCCCTATGGACTGGGCCTGGCCCATTGGCTGTACTGGCCGG 16824 ||||||||||||| |||| ||| ||||| |||||||||||||| | || ||||||| Sbjct 432 GCGCCGACAACGATGATGCGCCGTATGGCCTGGGCCTGGCCCACTACGCCTATTGGCCGG 373 Query 16825 TGTTCTTCAAGCGCAACGGCATCAAGTTCTGGCTGATCTTCCTGGACAAGTTCGGTATGC 16884 |||||||||||||| || | | |||||||||||| | ||| ||||||||||| | | Sbjct 372 TGTTCTTCAAGCGCTCCGACCTGAAGTTCTGGCTGGTGTTCGCCGACAAGTTCGGCAACC 313 Query 16885 CCACGGCGGTCGGC-CGCT--ATGACGACAAG------ACCGCCACCCCCGAGGACAAGG 16935 |||| || || ||| | | | || |||| || || | ||||| | Sbjct 312 CCACCGCCGTGGGCAAGATTCCCGGCGGCAAGTGGGAAGACGAAACGCTGAAGGAC---G 256 Query 16936 CCAAGCTACTGGCGGCCCTGCATGCCATACAG-ACTGATTCGGCAATCATCATGCCCGCC 16994 || | |||| ||| |||| | || | ||| | || ||||| ||| | |||||| Sbjct 255 CC---GTGCTGGAGGCGCTGCTTTCC-TTCAGCAGCGAATCGGCGATCGTGGTGCCCGAG 200 Query 16995 GGCATGCAGGCGGAGCTGCTGGAAGCCGGGCGCTCCGGGACCGCCGACTA-CAAGACCTT 17053 | | | | ||||||||||||||| | ||| ||| | || | ||| | || | | Sbjct 199 GAAACGACCGTGGAGCTGCTGGAAGCGGCCCGCAGCGGCAGCGGCACCTATGATGAGC-T 141 Query 17054 GCATGACACGATGGACGCGACCATCGCCAAGGTCGGGCTCGGCCAGGTGGCGAGTACCCA 17113 | | ||| |||||||| | | || |||||| |||||||| || || | | Sbjct 140 GTACGACCGCATGGACGCTGCGCTGGCGAAGGTCATCATCGGCCAGACCGCCAGCAGCGG 81 Query 17114 GGGCACCCCCGGCCGTCTGGGCAACGATGATTTGCAGGCCGATGTTCGCCTTGACCTGGT 17173 ||||| |||||| ||||||| ||| || ||| ||||| || || || ||||| || Sbjct 80 CGGCACGCCCGGCAAGCTGGGCAGCGAGGAGCTGCGCGCCGAGGTGCGGCTAGACCTAGT 21 Query 17174 GAAGGCCGACGCGGATCT 17191 ||||||||||| || || Sbjct 20 CAAGGCCGACGCCGACCT 3 >seq42978 Length=612 Score = 89.7 bits (98), Expect = 1e-13 Identities = 172/251 (69%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 26105 TATGTCGAGCCTTTCGCAGGTGGGGCGGCACTGTTCTTCCTACGGCCG-GTGCCGGCGGA 26163 || ||||| | ||||| || || || || ||| | ||| | ||| | ||||||| | Sbjct 354 TACGTCGAAGCATTCGCCGGCGGCGCAGCGCTGCTGTTC----GCCCGCGAGCCGGCGAA 409 Query 26164 TGTGGAAGTGCTCAACGACATCAACGGCGACCTGGTCAACCTGTACCGCGTCGTTCAGCA 26223 || |||||| ||||||| | | ||||| ||||| ||| || ||||| || | Sbjct 410 GGTCGAAGTGATCAACGATGTGCATGGCGAGCTGGTGCGCCTCTATCGCGTTGTGGCCAA 469 Query 26224 TCATCTGGAAGAGTTCGTCCGCCAGTTCAAATGGGCGCTCAGCTCTCGCCAGGTCTTCAA 26283 || ||||| |||||| | ||||||| | ||||| || | ||| | | ||||| Sbjct 470 CCACCTGGACGAGTTCATGCGCCAGTCCGG-TGGGCACTGACGAGCCGCGAAATGTTCAA 528 Query 26284 GTGGCTGCAGGAGACCCGGCCGGAAACGCTGACCGACATCCAGCGCGCCGCGCGCTTTTA 26343 |||| |||| | || |||||||| || ||||| ||||| || || || || | Sbjct 529 GTGGGCGCAGCTCCAGCACCCTGAAACGCTCACTGACATTCAGCGTGCGGCTCGGTTCTT 588 Query 26344 CTACCTGCAGC 26354 ||||||||||| Sbjct 589 CTACCTGCAGC 599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122693061288600