Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq27421 127 3e-24 seq50444 114 2e-20 >seq27421 Length=7303 Score = 127 bits (140), Expect = 3e-24 Identities = 322/488 (66%), Gaps = 4/488 (1%) Strand=Plus/Plus Query 193689 TTTGAGATGCCAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAA 193748 |||||| || || |||||| | ||||||||||| | || |||||| | || | ||| Sbjct 1418 TTTGAGGCTCCTGAATATACTGCAGATGTTGATGCTATTGGCACTCTTCGTTTATTAGAA 1477 Query 193749 GCAGTTCGTATGTTGGGAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAA 193808 || | || | | ||| || ||| | | |||||||| || || ||| Sbjct 1478 GCTATCCGATTCCTTGGATTGACTAAAAAAACCAAATTTTATCAGGCTTCAACGTCTGAA 1537 Query 193809 CTGTATGGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCT 193868 || |||||| |||| | | ||||| | |||||| || |||||| | ||||| | Sbjct 1538 CTTTATGGTTTGGTTCAGGAAATTCCACAAAAAGAAACTACGCCATTTTACCCACGTAGT 1597 Query 193869 CCTTATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATAT 193928 ||||||| ||||||||| |||||| || ||||| | || |||||||| | ||| Sbjct 1598 CCTTATGCTGTAGCAAAAATGTATGCATACTGGATTACTGTAAACTATCGTGAAGCTTAT 1657 Query 193929 GGATTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACA 193988 || | | || || ||| || | ||||| || |||||||| | | || || ||| Sbjct 1658 GGTATGTATGCGTGTAATGGGATCTTATTCAACCATGAATCTCCGCGTCGTGGCGAAACA 1717 Query 193989 TTTGTAACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGG--ATTACAGAAGA 194046 |||||||| || || ||||||| || | | || || | || | | | | | Sbjct 1718 TTTGTAACGCGCAAAATTACACGTGGCATGGCGAATATTGCCCAAGGCCTTGAAACAGCA 1777 Query 194047 TTCTTTATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTG 194106 || ||| | || || | |||| | | |||||||||||||| || |||||||| Sbjct 1778 ATC--TATATGGGCAACATGGATGCACTGCGAGATTGGGGACACGCTAAAGATTATGTCA 1835 Query 194107 AAGCGATGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTG 194166 || | ||| | ||| ||||||| || | || || || | ||||||||| || |||| Sbjct 1836 AAATGCAATGGATGATGCTGCAACAAGAGCAGCCAGAAGACTTTGTGATTGCGACGGGTG 1895 Query 194167 AACAGTAT 194174 || ||| Sbjct 1896 TTCAATAT 1903 >seq50444 Length=3642 Score = 114 bits (126), Expect = 2e-20 Identities = 257/386 (67%), Gaps = 0/386 (0%) Strand=Plus/Minus Query 193788 TATCAGGCATCTACCAGCGAACTGTATGGTGGTGTTCTAGGCACTCCACTATCAGAAACC 193847 ||||| ||||| ||| ||||| |||||| || | || | || | | |||||| Sbjct 969 TATCAAGCATCAACCTCTGAACTTTATGGTCTGGTGCAAGAGATACCCCAAAAAGAAACG 910 Query 193848 ACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGGATCATC 193907 |||||||| | |||||| ||||||| ||| || || |||||| || ||||| | | Sbjct 909 ACACCATTCTACCCACGCAGCCCTTATGCTGTGGCTAAAATGTATGCATACTGGATTACC 850 Query 193908 AAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAA 193967 || ||||| || || || ||| | | || || || ||| | || ||||||||| Sbjct 849 GTCAACTATCGCGAATCTTACGGAATGTATGCCTGTAACGGGATTTTGTTTAATCACGAA 790 Query 193968 TCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGTTTATCTAAGATC 194027 |||||| | | || || || || ||||| ||||| || |||| ||| | | || || Sbjct 789 TCTCCACGCCGTGGCGAAACTTTCGTAACACGTAAAATCACACGTGGTATGGCGAATATT 730 Query 194028 TCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGA 194087 || ||| | | | | || ||| | || || | |||| | |||||||| Sbjct 729 GCTCAAGGACTTGAAACTACGCTCTATATGGGCAACATGGATGCACTCCGCGATTGGGGC 670 Query 194088 CACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAACCCGATGAT 194147 || ||||| |||||||| || | |||| | ||| |||| ||||| || || || Sbjct 669 CATGCAAAAGATTATGTAAAAATGCAGTGGATGATGCTGCAGCAGGAAACGCCTGAGGAC 610 Query 194148 TATGTGATTGCTACAGGTGAACAGTA 194173 | ||| ||||| || || | ||||| Sbjct 609 TTTGTTATTGCAACGGGCGTTCAGTA 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 806239894468000