Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq41062 100 3e-16 >seq41062 Length=2478 Score = 100 bits (110), Expect = 3e-16 Identities = 271/402 (67%), Gaps = 12/402 (3%) Strand=Plus/Plus Query 162253 TATGATTCATATAAGTATCCAGTATTTGATAAACTAACACAACAACAGTTAGGATATTTC 162312 |||||| || || ||| || |||||| ||| | || || || | | | |||| Sbjct 329 TATGATGCAGTAAAATATTCACCATTTGAAAAAATGACTGAAAGTCATCAAAGTTTTTTC 388 Query 162313 TGGAGACCAGAAGAAGTATCACTACAAAAAGATCGTGGTGACTATCAACAACTAACACCA 162372 ||| | ||| ||||||| || |||||| ||| ||| | | || |||| || | Sbjct 389 TGGCGTCCACAAGAAGTTGATTTATCAAAAGACCGTATTGATTTTAAATCACTA-CAGGA 447 Query 162373 GAAC-AGAAGCATATCTTTACTTCTAATTTGAAGTATCAGATCATGCTTGACTCTGTACA 162431 | |||||||||| || |||||||||||||| ||| || | ||||| || || || Sbjct 448 TCATGAGAAGCATATTTTCACTTCTAATTTGAAACGTCAAATTCTTCTTGATTCAGTTCA 507 Query 162432 AGGTCGTGCACCTGGTATGGCATTTGCACCATACTG-TTCTTTACCTGAGTTAGAAGGTT 162490 |||||||| ||| | ||| | |||| | || ||| |||||||| | ||| || Sbjct 508 AGGTCGTGGACCAAACCTAGCACTATTACCA-ATTGCTTCATTACCTGAAATTGAATCTT 566 Query 162491 GTATT-AATGTATGGCAGTTTATGGAGATGATTCATAGTAGATCATACACATACATTATT 162549 ||| || | |||| ||| | || | ||||||| | || || ||| | |||||| Sbjct 567 TCATTGAAACTTGGGCA-TTTTTTGAAAGCGTTCATAGCCGTTCCTATACACATATTATT 625 Query 162550 AAGAATGTATATTCAGATCCTTCAGAAGTATTTGATACTATTATTAAAGATAC---AAAT 162606 || || ||| | |||| || |||||||||||||||| | ||| | || | |||| Sbjct 626 CGTAACGTGTATCCGAATCCATCGGAAGTATTTGATACTA-TGTTAGATATTCCTGAAAT 684 Query 162607 ATACTACAACGTGCAGAATCTGTCACAAAATCTTATGATGAT 162648 ||| | | |||||||| | | |||| | ||||||||| Sbjct 685 -TAC-ATCATGTGCAGAAGATATTGCAAAGTACTATGATGAT 724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569339974692000