Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_007019.1 Length=34704 Score E Sequences producing significant alignments: (Bits) Value seq115158 517 2e-142 seq123790 316 5e-82 seq125025 311 2e-80 seq125381 266 7e-67 seq30831 149 1e-31 >seq115158 Length=1188 Score = 517 bits (572), Expect = 2e-142 Identities = 501/637 (79%), Gaps = 13/637 (2%) Strand=Plus/Plus Query 24710 AATTGGTTTGAAAGTCGTCGAGGAAAACTCACTTATTCAATGTATGGCAGTCGAAACGGT 24769 |||||||||| | | |||||| ||| | || |||||||||||||| || ||||| Sbjct 556 AATTGGTTTGTTAACCATCGAGGCAAATTGACCTATTCAATGTATGGGTCACGCAACGGA 615 Query 24770 TCAGACGGTACAGCGGACTGTTCAGGGGCAATTTCACAAGCTTTGAAAGAAGCAGGAGTA 24829 ||||||||||||| ||||| || || | || |||||||| | |||||||| || | Sbjct 616 GCAGACGGTACAGCTGACTGCTCTGGTTCCATATCACAAGCCCTAAAAGAAGCTGGTATT 675 Query 24830 AATATTGTTGGTTTACCGTCAACGGTCACTCTAGGCTCACAATTGGCAAATAATGGCTTT 24889 |||| ||| |||| || || || || ||||| |||| | || || ||||| || Sbjct 676 GGTATTCAAGGTCTACCATCTACTGTTACACTAGGTCAACAACTTGCCAAAAATGGATTC 735 Query 24890 TATCGTGTGTCAAAAAACGAAGATTGGAACG----GACAACGAGGGGACATTATTTTGAT 24945 ||||| || | || |||||||| | | |||| || || ||| | || || Sbjct 736 TATCGAGTAAGTATTAATCAAGATTGGGATGCTTTGACA----GGCGATATTGTGTTAAT 791 Query 24946 GTCTTGGGGTGCTGACATGTCACAATCTGGCGGAGCTGGGGGTCACGTTGGTGTCATGAT 25005 ||| |||||| |||| ||||| ||||||||||||||| || ||||||||||||||||| Sbjct 792 GTCATGGGGTTCTGATATGTCCACATCTGGCGGAGCTGGAGGGCACGTTGGTGTCATGAT 851 Query 25006 GGATAGTGTAAACTTCATTAGTTGCGACTATTCAACTCAAGGAGCAGTAGGCCAAGCTAT 25065 |||| | | |||| ||||||||||| |||||||||||||| ||| || |||||||| Sbjct 852 GGATGCTACATACTTTATTAGTTGCGATTATTCAACTCAAGGGGCACCTGGGCAAGCTAT 911 Query 25066 CAATACTTACCCATGGAACGACTACTATGTAGCTAATAAGCCTTCATACATTGAAGTGTG 25125 |||||||||||| ||||| |||||||||| ||| || |||||| |||| || || ||||| Sbjct 912 CAATACTTACCCGTGGAATGACTACTATGCAGCGAACAAGCCTGCATATATCGAGGTGTG 971 Query 25126 GCGTTATGCTGATACTGCCCCACAAACAAATAATCAAGCGAATACTGC-GGTAG-TGCCA 25183 ||||||| |||| ||||| || ||||| || || ||||| ||||| || | ||| ||| Sbjct 972 GCGTTATTCTGACACTGCACCGCAAACCAACAACCAAGCTAATACAGCAGCTAGACACCA 1031 Query 25184 CAGTCTAAAGCTTACTATGAAGCTAATGAAGTCAAATATGTTAA-CGGTATTTTCCAAAT 25242 || || ||||||||||||||||||||||| ||| ||||| || |||| || || Sbjct 1032 CAACAAAAGGCTTACTATGAAGCTAATGAAGTTCAATTCGTTAATGGGAATTTGGCAGAT 1091 Query 25243 TAAATGTGACTATTTGGCACC-CGTTGGATTCGACTGGGTTAACTAATTTTCGGCTCAGT 25301 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1092 CAAATGTGACTATTTGGCACCTGGTTGGATTCGACTGGGTTAACTAATTTTCGGCTCAGT 1151 Query 25302 ATAAACTAAGT-GAACGCAAACAAAGCGGTGTCATGC 25337 ||||||||||| ||||||||||||||||||||||||| Sbjct 1152 ATAAACTAAGTGGAACGCAAACAAAGCGGTGTCATGC 1188 >seq123790 Length=336 Score = 316 bits (350), Expect = 5e-82 Identities = 210/232 (91%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 34470 TATACAGAAATTGGAATTCTAACACCTCGGAAGGTAATCCAATTAGAAGGGCTTCTGTCT 34529 |||||||||||||| | | |||||||||| ||||||||||||||||| || ||||||||| Sbjct 16 TATACAGAAATTGGCAGTTTAACACCTCGCAAGGTAATCCAATTAGAGGGTCTTCTGTCT 75 Query 34530 AGAGAGCTATTCGGTAAGATAGCTAAGTACGTCTTTAATAAGTATGAGTGGCCTGAAAGC 34589 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct 76 AGAGAGCTATTCGGTAAGATAGCGAAGTACGTCTTTAATAAGTATGAATGGCCAGAAAGC 135 Query 34590 CTAGATAGCGAAGTTGATCGTATCTATTTAGAATATCGCACCAAAGGTGATCTAGGTCTT 34649 |||||| | ||||||| | |||||||||||||||||||| |||||| ||||||||| | Sbjct 136 CTAGAT-GAAGAGTTGATAGAATCTATTTAGAATATCGCACTAAAGGTAATCTAGGTCGT 194 Query 34650 GAAAAGGAAAGTGTTAAACGTACACTATATAAAGCGATCTCTATGGGCTTGT 34701 || || |||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 195 GATAAAGAAAGTGTTAAACGCACACTATATAAAGCGATGTCTATGGGCTTGT 246 >seq125025 Length=589 Score = 311 bits (344), Expect = 2e-80 Identities = 364/482 (76%), Gaps = 11/482 (2%) Strand=Plus/Minus Query 21114 TGTCTGATCGTTGGAATTTCATCGATACTTACATGAACTCATCAAATGATGGGCTTGTGA 21173 |||| || ||| ||||||| ||||||| |||||| |||||||||| || ||||| | Sbjct 482 TGTCAGAACGT-GGAATTTTATCGATAGCTACATGGCAGCATCAAATGAAGGTCTTGTTA 424 Query 21174 TTGGAAAGAA--TGACGGTAGCTCTAGCATGATGTTTAACCCTAACGGTCGCATTTCAAT 21231 |||| || || ||| ||||||| |||| || || || ||||| || || ||||| Sbjct 423 TTGGTAAAAAGATGAATCAAGCTCTATCATG---TTCAATCCAAACGGGCGTATCTCAAT 367 Query 21232 GTACTCGGCAGGGGAGGAGGTCA-TGTATA-TTTCGCAAGGTGTAATACACATCGAGAAC 21289 || ||| || ||| | ||||| | |||| | |||| ||||| | || || ||||| ||| Sbjct 366 GT-CTCAGCTGGGAACGAGGTTAATGTACAATTTCAAAAGGTATCATCCATATCGAAAAC 308 Query 21290 GGGATCTTCTCGAAAACTATCCAAGTTGGTCGATATCGTGAGGAACAGTACCATCTTAAC 21349 || || ||||| ||| |||||||| | || |||||||| |||||||| | | || Sbjct 307 GGTATTTTCTCTAAATCTATCCAAATCGGACGATATCGAGAGGAACAAGATTTATTGAAT 248 Query 21350 CCAGACATGAATGTCATTCGCTATGTAGGAGGTTTTTAATTGGCTGAATTTTGGAGTAAT 21409 |||||| ||||||||| | || ||||||||| |||| ||||||||||||||||||| Sbjct 247 CCAGACCGTAATGTCATTAGATACGTAGGAGGTGCATAAT-GGCTGAATTTTGGAGTAAT 189 Query 21410 AATGATAGAGGCTATAGGATTAGGTTATGGATTGACCAGGTTAGTCAAGACAAAGTAGCT 21469 | || | || ||| | || | | ||| | ||||||||| ||||||| | | Sbjct 188 AC-GACCGTGGATATCGTATCCGTCTTTGGGTCGACCAGGTTGGTCAAGATATCCAAAAC 130 Query 21470 AATACCAGTCAGGTCAGATTTCAACTAGCACTGCTAAATACGACTACGACTTTTGCTCAA 21529 ||||| ||||| || ||||| | | |||| | ||||||||||| || || ||||||||| Sbjct 129 AATACAAGTCAAGTTAGATTGCGATTAGCGTTACTAAATACGACAACTACGTTTGCTCAA 70 Query 21530 TATCAATGTAACGCTTATATCGAGTTTGAAGGTCAAAGATTGAATTGGTCAGGTTCACCT 21589 |||||||||| |||||| |||| ||| | |||||| ||||||||||||| ||||||||| Sbjct 69 TATCAATGTAGTGCTTATGTCGAATTTAACGGTCAACGATTGAATTGGTCTGGTTCACCT 10 Query 21590 AG 21591 || Sbjct 9 AG 8 >seq125381 Length=275 Score = 266 bits (294), Expect = 7e-67 Identities = 224/274 (82%), Gaps = 1/274 (0%) Strand=Plus/Minus Query 34156 TTGATAACGTGGTTAAAGAGCGTTCGAAACTATCACCTTCAACATTGGACGATATGCGCG 34215 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | | Sbjct 273 TTGATAACGTGGTTAAAGAGCGTTCGAA-CTATCACCTTCAACATTGGACGATATGAGTG 215 Query 34216 AATATCTTACGGACGGTCTAGTTAATGACTTACAAGAGTATCTATTAAAGAACTATTCAG 34275 | ||||||||| |||| ||||| |||||||||| ||||||||| | |||||||||| | Sbjct 214 AGTATCTTACGAACGGCCTAGTGAATGACTTACGAGAGTATCTGGCAGAGAACTATTCTG 155 Query 34276 TAAGACGTGGGTCATGTAAACCAGATGCTGATAAAACTAATGCAGGTCTTACAAGAGAGC 34335 ||| ||||||||| ||| ||||||||||||||| |||| || || || || | || | Sbjct 154 ACAGAAGTGGGTCATCTAAGCCAGATGCTGATAAAGCTAACGCTGGGCTGACTAAGGAAC 95 Query 34336 TCTTCCTTCAATATCGCAAGGAAATCCAAGAGTTAAGAGCAGCACACCCTAACTGCGTCA 34395 | |||| | ||| ||||||||| |||||||||||||||||||||||||| | | Sbjct 94 TTTTCCGAGAGCTTCGAAAGGAAATCGAAGAGTTAAGAGCAGCACACCCTAACCGTAACG 35 Query 34396 TAAACTACATAATGGAAGTGAAAGGCTGTACAAA 34429 | | || | |||||||||||||| || |||| Sbjct 34 CAGAATATGTTATGGAAGTGAAAGGATGCTCAAA 1 >seq30831 Length=459 Score = 149 bits (164), Expect = 1e-31 Identities = 96/105 (91%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 19799 ATGCCCTCGGCTAGCGAAGTCACAACTGCTGATTATCCAAGTTTCATCGGACAATATACA 19858 ||||| || |||||||||| |||||||||||| |||||||||||||||||||| || ||| Sbjct 105 ATGCCATCAGCTAGCGAAGCCACAACTGCTGACTATCCAAGTTTCATCGGACACTACACA 46 Query 19859 AACTATACACAAGTAGATAGTCCTAATCCTCGAGATTACACTTGG 19903 ||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 45 GACTTTACACAAGTAGATAGTCTTAATCCTCGAGATTACACTTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110759554767600