Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq33499 158 1e-33 seq7210 114 1e-20 seq33108 102 9e-17 seq34305 98.7 1e-15 >seq33499 Length=26748 Score = 158 bits (174), Expect = 1e-33 Identities = 265/381 (70%), Gaps = 2/381 (1%) Strand=Plus/Minus Query 54935 TCCATCAGCATCTGGCCATCGTAACCAGCACCTACGACAGTCTGCGGTACACCACCTTGA 54994 ||||| | || || || ||||| || |||| | || || || |||||||||||||| Sbjct 24084 TCCATAATCAACTTACCTTCGTAGTCACCACCAATAACTGTTTGTGGTACACCACCTTGG 24025 Query 54995 TACTTGTTGGCGCGAATCATTTCAACTTCCAGCTGACGCCATTTGATCATTTCAGGGGTG 55054 || || | || || ||||||||||||| || || ||| ||||| || || ||| Sbjct 24024 TATTTCTCAGCACGTTTCATTTCAACTTCGAGTTGTTTCCAACGAATCATCTCTGGAGTG 23965 Query 55055 ATAGTTTTCTGCAACAGGGAGTTAGCTTCGGCTTCTTTACCAGCAGCGTACAGCTTGGCA 55114 || ||||||||||||| ||||||||| |||||||| |||||| || | || ||| Sbjct 23964 ATTGTTTTCTGCAACACACTGTTAGCTTCAGCTTCTTTTTGAGCAGCATATAATTTAGCA 23905 Query 55115 TCAGCATCTCGCTCGTTGGCTACAGCGTTCTGTTCGCGAGCTTCTCGTGCGGCCTCGGCA 55174 || |||||||| ||||| || || | | | || |||||||| | ||||| || Sbjct 23904 TCTGCATCTCGTTCGTTTGCCTGGGCTTCATTATTACGGGCTTCTCGATCAGCCTCTGCC 23845 Query 55175 GTCTTAACTTGTTGCTGGGCAACCTTTTCAGCCTTGTCCAGGTCAGCTTGCGCTTGGTTT 55234 |||||||| |||||| | | || | | |||||| ||||| || ||| ||| Sbjct 23844 TTCTTAACTGCTTGCTGTGTTTCTTTAGCTACTCGGTCCAGATCAGCCTGTGCTGCGTTA 23785 Query 55235 ACCGCTTCTTCACGGAT-TTTGGTTTGCTCAACTTGATCTTGGATCAGCTTAGGCAGAGT 55293 ||| ||||||||| || |||| || | | || || | ||| | | ||||| || Sbjct 23784 ACCTGTTCTTCACGAATCTTTGTATTTGTTACCTGCTTCAT-GATTACATCAGGCAAGGT 23726 Query 55294 GATTTCCTGCAGGAAAACTTC 55314 ||| || |||| ||| | ||| Sbjct 23725 GATATCTTGCAAGAAGATTTC 23705 >seq7210 Length=4643 Score = 114 bits (126), Expect = 1e-20 Identities = 160/220 (73%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 6973 ATCGCCTGGACTCAGCAACGCATGGTAAACA--GCTTGGTTTGCCTGTGAACCGGAATGG 7030 ||||||||| ||||| || |||||||| || ||| ||||||||||| || || Sbjct 1756 ATCGCCTGGCTGCAGCAGGGC--GGTAAACACAGCAAAGTTAGCCTGTGAACCTGAGTGC 1813 Query 7031 GGTTGAACGTTTGCGAAAT-TGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTT 7089 || || ||||| || ||| ||| || |||||| |||| ||||| || || ||||| | Sbjct 1814 GGCTGTACGTTGGCATAATCTGC-ACCAAACAGCGCTTTCGCACGATCGATAGCCAGCTG 1872 Query 7090 CTCGATCTCATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGC 7149 ||| | ||| | | | || ||||||||||| |||||||| ||||| || ||||| Sbjct 1873 CTCAACAATATCTACATACTCGCAGCCGCCGTAATAACGTTTGCCAGGATAGCCTTCAGC 1932 Query 7150 ATACTTGTTGGTAAAAATAGAACCTTGCGCTTTCATAACA 7189 ||| || ||||| | ||||||||||| | ||| ||| Sbjct 1933 ATATTTATTGGTGAGCTGTGAACCTTGCGCCTGCATTACA 1972 >seq33108 Length=3479 Score = 102 bits (112), Expect = 9e-17 Identities = 120/161 (75%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 65616 ATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCGTACGGCATAGCCGGAAACA 65675 || ||||| || ||||| ||||| || | | ||||||||| |||||||| ||||||||| Sbjct 2940 ATGACGTCACGCTGTTGTTCAGGCGTCAGCGAATTAAAGCGCACGGCATACCCGGAAACA 2881 Query 65676 CGGATGGTTAGCTGGGGATATTTTTCTGGA---TTAACGATTGCATCTTCCAGGGTATTT 65732 || ||||| ||||| ||||| || || ||| || ||| || |||||||| || | Sbjct 2880 CGAATGGTCAGCTGCGGATACTTCTCAGGATGTTTCACG---GCGTCTTCCAGCGTTTCA 2824 Query 65733 CGGTCAAGAACATTTACGTTGAGATGCTGACCACCTTCAAC 65773 ||| || || || ||||| | ||||| || ||||| || Sbjct 2823 CGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCCTTCCAC 2783 >seq34305 Length=2218 Score = 98.7 bits (108), Expect = 1e-15 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 65589 TAAAGGGATTGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCA 65648 || || || || || || || || || || |||||| | || ||||| || | | Sbjct 587 TAGAGTGACTGGGTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGCGAG 646 Query 65649 TTAAAGCGTACGGCATAGCCGGAAACACGGATGGTTAGCTGGGGATATTTTTCTGGATTA 65708 |||||||| ||||||||||| ||||| |||||||||| ||| |||||||| || || ||| Sbjct 647 TTAAAGCGAACGGCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGGTTA 706 Query 65709 ACGATTGCATCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACCT 65768 | ||||| || || | | |||| | || || || || |||||||| || ||| Sbjct 707 TCCATTGCGTCCATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCGCCT 766 Query 65769 TCAA 65772 |||| Sbjct 767 TCAA 770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552452325324000