Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_007710.1 Length=46643 Score E Sequences producing significant alignments: (Bits) Value seq57116 264 3e-66 seq8114 194 5e-45 seq50133 113 1e-20 >seq57116 Length=609 Score = 264 bits (292), Expect = 3e-66 Identities = 224/272 (82%), Gaps = 4/272 (1%) Strand=Plus/Minus Query 35624 GCGGTGATCCTGCCGCGCTCGGGGCTTGGCCATCGTCACGGCATCGTACTCGGCAACGGT 35683 ||| ||||||||||||| ||||| || ||||| || ||||||||||| ||||||||||| Sbjct 607 GCGCTGATCCTGCCGCGTTCGGGCCTGGGCCACCGCCACGGCATCGTGCTCGGCAACGGC 548 Query 35684 ACCGGCCTCATCGATGCGGATTACCAGGGGTCGTTGTTGATCAGCACCTGGAATCGCGGC 35743 |||||||| |||||||| || |||||||| || || |||||||| |||||| || ||| Sbjct 547 ACCGGCCTGATCGATGCCGACTACCAGGGACCGCTGCTGATCAGCGTCTGGAACCGAGGC 488 Query 35744 CGCGAGGCCTTCACCATCGAGCCGGGCGACCGGATTGCGCAGCTGGTGATCCTG-CCGGT 35802 ||||||| ||||||||||| || |||||||| || ||||| |||||| | || ||||| Sbjct 487 CGCGAGGACTTCACCATCGCCCCCGGCGACCGCATCGCGCAACTGGTGGTGATGCCCGGT 428 Query 35803 CGTGCGCGTAGGCTTGCG--AGTGGTGGACACTTTCGT-CGACAGCGCGCGCGGCGCGGG 35859 |||||| || | | |||| |||||||| |||||||| ||||||||| | || |||| Sbjct 427 CGTGCGTGTTGCCCTGCGCAGGTGGTGGATACTTTCGTCCGACAGCGCCAGGGGAACGGG 368 Query 35860 TGGATTCGGTCACACCGGCGTGCGCTGACTGG 35891 ||||||||| || ||||| |||||||||| || Sbjct 367 TGGATTCGGCCATACCGGAGTGCGCTGACAGG 336 >seq8114 Length=3463 Score = 194 bits (214), Expect = 5e-45 Identities = 318/448 (71%), Gaps = 18/448 (4%) Strand=Plus/Minus Query 35450 AAGTTGCTCGACCCGCGTTTCGG---CGATCTGTGGCCGTTGCCGGCCTATGCCACCGAA 35506 ||| | ||||||||||| | || |||| | ||| ||||| |||| |||||| Sbjct 1464 AAGATCCTCGACCCGCGCCTGGGGCGCGATTTC---CCGCTGCCGTCCTACGCCACCCCC 1408 Query 35507 GCCAGTGCAGGCATGGACCTGCGTGCCGCACTGGAGGCGCCGATGACGTTGCAGCCGGGC 35566 | | || ||| | |||||||| ||| ||| ||| | || | || ||||||| Sbjct 1407 GGCTCGGCCGGCCTCGACCTGCGCGCCATGCTGCAGGAGGATCTGGTGCTGGAGCCGGGG 1348 Query 35567 GATGCGGCGCTGATTCCCAGCGGCATCGCGATCCATCTGGCCGACCCGCAGCTGTGCGCG 35626 | | ||||||||||||| ||| |||| |||||| ||||||| ||| |||| ||| Sbjct 1347 CAGACCGCGCTGATTCCCACCGGGCTCGCCATCCATGTGGCCGATCCGTCGCTGGCGGCG 1288 Query 35627 GTGATCCTGCCGCGCTCGGGGCTTGGCCATCGTCACGGCATCGTACTCGGCAAC--GGTA 35684 ||||||||||||||||||| || |||||| ||||||||||| || |||||| ||| Sbjct 1287 CTGATCCTGCCGCGCTCGGGCCTGGGCCATAAGCACGGCATCGTGCTGGGCAACCTGGT- 1229 Query 35685 CCGGCCTCATCGATGCGGATTACCAGGGGTCGTTGTTGATCAGCACCTGGAATCGCGGCC 35744 |||||| ||||| |||| |||||||| | || || || | |||||||||||||| Sbjct 1228 -CGGCCTGATCGACTCGGACTACCAGGGCGAGCTGATGGTCTCCTGCTGGAATCGCGGCC 1170 Query 35745 GCGAGGCCTTCACCATCGAGC-CGGGCGACCGGATTGCGCAGCTGGTGATCCTGCCGGTC 35803 |||||||| | |||| |||||| || || || |||||| || || | || || Sbjct 1169 AGACCACCTTCACCGT-GAGCGTGGGCGAACGTATCGCCCAGCTGATGCTCGTACCTGTG 1111 Query 35804 GTGC--GCGTAGGCTTGCGA-GTGGTGGACACTTTCGTCGACAGCGCGCGCGGCGCGGGT 35860 |||| ||| | ||| ||| | || |||| || ||| | || ||| ||||| || Sbjct 1110 GTGCAGGCGCA--CTT-CGATATCGTCGACAGCTTTACCGAGACCGAGCGGGGCGCTGGC 1054 Query 35861 GGATTCGGTCACACCGGCGTGCGCTGAC 35888 || ||||| ||| |||| ||||||| Sbjct 1053 GGCTTCGGCCACTCCGGTACCCGCTGAC 1026 >seq50133 Length=630 Score = 113 bits (124), Expect = 1e-20 Identities = 125/165 (76%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 35645 GGGCTTGGCCATCGTCACGGCATCGTACTCGGCAAC--GGTACCGGCCTCATCGATGCGG 35702 ||||| ||||| ||||||||||| || |||||| ||| |||||||||||| | Sbjct 186 GGGCTGGGCCACAAGCACGGCATCGTGCTGGGCAACCTGGT--CGGCCTCATCGACAGCG 243 Query 35703 ATTACCAGGGGTCGTTGTTGATCAGCACCTGGAATCGCGGCCGCGAGGCCTTCACCATCG 35762 ||||||||||| |||| || ||||| ||||||| ||| || | ||||||||| | Sbjct 244 ATTACCAGGGGCAGTTGATGGTCAGCGCCTGGAACCGCAGCGACACCGCCTTCACCCTGC 303 Query 35763 AGCCGGGCGACCGGATTGCGCAGCTGGTGATCCTGCCGGTCGTGC 35807 ||||| || ||| | || ||||| |||||| ||||||| |||| Sbjct 304 AGCCGATGGAGCGGCTGGCCCAGCTCGTGATCGTGCCGGTGGTGC 348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148905240003000