Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_007804.2 Length=39104 Score E Sequences producing significant alignments: (Bits) Value seq29160 291 2e-74 seq38246 206 7e-49 seq44258 161 2e-35 seq35061 138 3e-28 seq10342 86.0 2e-12 seq77310 82.4 2e-11 >seq29160 Length=3305 Score = 291 bits (322), Expect = 2e-74 Identities = 629/932 (67%), Gaps = 24/932 (3%) Strand=Plus/Plus Query 30044 GTGTAGACGCCCATGATTACGTCAGGACAGTGCAAGCGAGACCAGCGTTTTGTCGCAAGG 30103 ||||| || || | ||| || || || || |||||||| | ||| | ||| || || Sbjct 2188 GTGTAAACACCGAGGATGACATCCGGGCAATGCAAGCGGGCCCACCTTTTAACGGCCAGA 2247 Query 30104 TATGCGAGTTGTTGTTTCGGATCACTGGCCCAAAGTGTGGAGTTTCTTACCTGTGCTTGA 30163 || ||||| || ||||||||||| || ||||| || || || ||||| ||||||||||| Sbjct 2248 TACGCGAGCTGCTGTTTCGGATCGCTCGCCCACAGCGTTGAATTTCTGACCTGTGCTTGT 2307 Query 30164 GACAGCATTAACTCAAGCACTCGAGGTTGATCCTCGCCCTTCATGGTTGCCCATACGCGA 30223 || | || | || || || ||||||| | ||| |||||| || ||||| ||||| Sbjct 2308 GATAACAGCAGTTCCAGTACGCGAGGTTCCTGCTCATTCTTCATTGTCGCCCAGACGCGG 2367 Query 30224 ACACCGCAGCCTTCTTCGTCTTTTAGAGTCCAGCCTGGTGCGATATATGGATTGCCGTTT 30283 || |||||| | |||| |||| || |||||||| | || | || || || || Sbjct 2368 ACGCCGCAGTCGGCTTCATCTTCAAGTGTCCAGCCGGAAACGGTGTACTTATGTCCTTTA 2427 Query 30284 TTGGATGTTTTCTCAACAAACTTACCGATCACGCGTTCCCACGGCCCGAACCACTCGTAG 30343 || ||||| || ||||| ||||||| || |||||| || ||||||||||| || Sbjct 2428 CCTGACGTTTTTTCGACAAATTTACCGAGGACTTTTTCCCATGGGCCGAACCACTCATAA 2487 Query 30344 T-TGATGCGATCTTTTGTTGGCGACATCGTTGAGATAACTGCGTTTACTAATTGGGCTTC 30402 | || | || || || || | |||||||| |||||| ||||| || | ||| || || Sbjct 2488 TGTGGT-CGGTCACGGGTGGGTGCCATCGTTGTGATAACCGCGTTCACCAGTTGTGCCTC 2546 Query 30403 ATAACCTAGCGTGCCGTTCACAACATGGGTTTTCTGAGCCACGGCAAACGGGTTCATTCC 30462 ||| || || ||| || || | |||||||||||| ||||| || |||||||| | Sbjct 2547 ATAGCCAAGTACGCCATTTACCAGGAAGGTTTTCTGAGCAACGGCGAAGGGGTTCATGCG 2606 Query 30463 CCACTGCGCAGCCTGCATTGCCACGGCCATGCAATCAGCTGGTTTCCCGGCGAGGTGCGC 30522 |||||| || ||||||||||| || || | || ||||||| ||| || || ||||| || Sbjct 2607 CCACTGTGCGGCCTGCATTGCGACAGCAAGACAGTCAGCTGTTTTTCCTGCCAGGTGTGC 2666 Query 30523 CGGTACCGTTACGCGGCTTTGCGCCATTACCTCGGCGAATTTCATCAGTTGGTTCAAGCC 30582 |||||| | || | ||| ||||| | || || || ||||| | || || | Sbjct 2667 CGGTACGGAAACTCTGCTGCTGGCCATGATGTCAGCAAAGCGAATCAGCTTGTCCAGTGC 2726 Query 30583 GTCTGGGCTGAAAATAGTTGCAGCAGTTCCAGCGATTGCTGTGTCTACTGGTGCGTTGAT 30642 || || |||||||| | | ||||| || || || | | || | ||| || Sbjct 2727 ATCCGGACTGAAAATCATGGATGCAGTGCCTGCATTTTCAGCATC------AGTGTTCAT 2780 Query 30643 GTTTGCGATGTCGTTGCTCATATGTACATATCCTGTTTTGCGTGCCCACTCAGGGCGTTT 30702 || | | | |||| || | |||| ||| |||||||| ||||||| Sbjct 2781 CAGTGGGGTAT------TCAT-CGTGGTTTTCCT-TTTAACGTGCCCATGCAGGGCGGCG 2832 Query 30703 AATGATTTCCACACCGCCCCATTCATCATTTATGCGGCATTCGTGATAGGTATTCAGATC 30762 || |||| || |||||||| | | || | | ||||| || || | || || || || Sbjct 2833 GATAGTTTCAACGCCGCCCCAGTGACCACTGAGACGGCAATCATGGAATGTGTTGAGGTC 2892 Query 30763 CCGGCGGAACAGAGCGTGCCCGGCATCGACATCCGGCGCATCCAGCTCGAACACGCGTAC 30822 || | || || || ||||| | ||| | ||| | || || || || || Sbjct 2893 GCGAC--AAAAGGTTGTATCCGGCGCTCAGATCATCCTCATGGA-CTTCAAAACCCGGAC 2949 Query 30823 CGGATACCGACCACAATCAATGCTTTCGCTCACGGCAAGAAAGAAAAAACCATGCGGCTG 30882 || || || || || |||||| |||||| || |||| ||||| ||| ||||| || Sbjct 2950 TGGGTAGCGTCCGCAGTCAATGGCTTCGCTTACCGCAATAAAGACAAA---CTGCGGATG 3006 Query 30883 ACCAGTAA--CCCTCATTGCGCCTTCGCGGTACATTGCGTCCTGCACGTGGTAGCGGAAT 30940 ||| | || |||||| ||||| || |||| |||||||| | |||| Sbjct 3007 CGTGTTAAAGGTGTTATAAAACCTTCGGAATACATAGCTGCCTGAACGTGGTACCTGAAT 3066 Query 30941 TCCTCGATGTGGCGTGCAAAACGGTCCATATC 30972 |||||||| ||||| ||||| ||| ||| || Sbjct 3067 TCCTCGATATGGCGAGCAAAGCGGGACATGTC 3098 >seq38246 Length=2704 Score = 206 bits (228), Expect = 7e-49 Identities = 336/480 (70%), Gaps = 9/480 (2%) Strand=Plus/Plus Query 30034 TTCGTCTGGTGTGTAGACGCCCATGATTACGTCAGGACAGTGCAAGCGAGACCAGCGTTT 30093 |||||| || ||||| || || | || || ||||| |||| | ||| | ||||||||| Sbjct 1513 TTCGTCAGGCGTGTACACACCTAAAATCACATCAGGGCAGTAAAGGCGCGCCCAGCGTTT 1572 Query 30094 TGTCGCAAGGTATGCGAGTTGTTGTTTCGGATCACTGGCCCAAAGTGTGGAGTTTCTTAC 30153 || || ||||| || ||||| || ||||| |||||||| | ||| ||||| | || Sbjct 1573 GGTTGCGAGGTAGGCCAGTTGCTGGCGGGGATCGCTGGCCCACAATGTTGAGTTACGCAC 1632 Query 30154 CTGTGCTTGAGACAGCATTAACTCAAGCACTCGAGGTTGATCCTCGCCCTTCATGGTTGC 30213 ||| || || ||||||| | || | || || | | || || | || || Sbjct 1633 CTGCGCCTGTGACAGCAAAATGGTCAGTTCGCGGGGCTTTT--TCATTTTTGAGCGTCGC 1690 Query 30214 CCATACGCGAACACCGCAGCCTTCTTCGTCTTTTAGAGTCCAGCCTGGTGCGATATATGG 30273 ||| || || || |||| | || ||||| || ||||| | || || |||||| Sbjct 1691 CCAGACCTTTACCCCAATGCCTGCCTCATCTTTCAGGCTCCAGGCCGGAGCAATATATTT 1750 Query 30274 ATTGCCGTTTTTGGAT---GTTTTCTCAACAAACTTACCGATCACGCGTTCCCACGGCCC 30330 ||||| || ||| ||||| || |||| || || ||| ||||||||| || Sbjct 1751 GTTGCCCTT---GGAACTGGTTTTTTCTTCAAATCGGCCAATGACGTTTTCCCACGGGCC 1807 Query 30331 GAACCACTCGTAGTTGATGCGATCTTTTGTTGGCGACATCGTTGAGATAACTGCGTTTAC 30390 ||||| ||| ||| | ||| |||||||| |||||||| || ||| |||||||| || Sbjct 1808 AAACCA-TCGAAGTGAAGGCGGTCTTTTGTCGGCGACATTGTATTGATCACTGCGTTGAC 1866 Query 30391 TAATTGGGCTTCATAACCTAGCGTGCCGTTCACAACATGGGTTTTCTGAGCCACGGCAAA 30450 | ||| || ||||| || || || ||| | |||| ||||||||||||||| ||||| || Sbjct 1867 CAGTTGAGCCTCATAGCCAAGGGTACCGCTGACAATATGGGTTTTCTGAGCGACGGCGAA 1926 Query 30451 CGGGTTCATTCCCCACTGCGCAGCCTGCATTGCCACGGCCATGCAATCAGCTGGTTTCCC 30510 ||||| | ||||| |||| |||||||| | || |||||||| | ||||||| || Sbjct 1927 CGGGTCAAGGCCCCAGCGCGCGGCCTGCATCACAACTGCCATGCACGCTTCTGGTTTGCC 1986 >seq44258 Length=764 Score = 161 bits (178), Expect = 2e-35 Identities = 206/282 (73%), Gaps = 5/282 (2%) Strand=Plus/Minus Query 30232 GCCTTCTTCGTCTTTTAGAGTCCAGCCTGGTGCGATATATGGATTGCCGTTTT---TGGA 30288 |||| | || ||||| || ||||| | || || |||||| ||||| || ||| Sbjct 727 GCCTGCCTCATCTTTCAGGCTCCAGGCCGGAGCAATATATTTGTTGCCCTTGGAACTGGT 668 Query 30289 TGTTTTCTCAACAAACTTACCGATCACGCGTTCCCACGGCCCGAACCACTCGTAGTTGAT 30348 | |||||| |||| || || ||| ||||||||| || ||||| ||| ||| | Sbjct 667 TTTTTTCTT--CAAATCGGCCAATGACGTTTTCCCACGGGCCAAACCAATCGAAGTGAAG 610 Query 30349 GCGATCTTTTGTTGGCGACATCGTTGAGATAACTGCGTTTACTAATTGGGCTTCATAACC 30408 ||| |||||||| |||||||| || ||| |||||||| || | ||| || ||||| || Sbjct 609 GCGGTCTTTTGTCGGCGACATTGTATTGATCACTGCGTTGACCAGTTGAGCCTCATAGCC 550 Query 30409 TAGCGTGCCGTTCACAACATGGGTTTTCTGAGCCACGGCAAACGGGTTCATTCCCCACTG 30468 || || ||| | |||| ||||||||||||||| ||||| ||||||| | ||||| | Sbjct 549 AAGGGTACCGCTGACAATATGGGTTTTCTGAGCGACGGCGAACGGGTCAAGGCCCCAGCG 490 Query 30469 CGCAGCCTGCATTGCCACGGCCATGCAATCAGCTGGTTTCCC 30510 || |||||||| | || |||||||| | |||||||||| Sbjct 489 TGCGGCCTGCATAACTACTGCCATGCATGCCTCTGGTTTCCC 448 >seq35061 Length=1748 Score = 138 bits (152), Expect = 3e-28 Identities = 132/169 (78%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 2285 TCGCTTAACTTCTGCTTCAGCAAGTAACCTTCAAGCATCCAGATTTTGTTTGCAGCATTC 2344 ||||| | || |||||||||| ||| |||||||| ||||||||| | | ||||| Sbjct 1502 TCGCTAAGTTTTTGCTTCAGCAGGTAGCCTTCAAGTTGCCAGATTTTACTAACGGCATTG 1561 Query 2345 TGCCGGGCAATCTTCCGACCAATTTCCGCATCAAAGTTTTCCGGGCTTGCACAGGCGCTC 2404 ||||| || | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 1562 GCACGGGCGATGCTACGACCTATTTCTGCGTCAAAGTTTTCCGGGCTGGCGCAGGCGCTT 1621 Query 2405 TCTCCGGTGACGGTGAAGCCGTTGCGCAGCACCAGAACGCAGAACGTCA 2453 || |||||||||||||| ||||| ||| ||||| || ||||| |||| Sbjct 1622 TCACCGGTGACGGTGAATCCGTTCTTCAGAACCAGTACACAGAAGGTCA 1670 >seq10342 Length=7320 Score = 86.0 bits (94), Expect = 2e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 2853 TGGCGTGGCATGCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCC 2912 ||||| | | |||||| ||||||||||||||| ||||||||||||||| |||||| ||| Sbjct 1518 TGGCGCGCCCGGCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATCC 1577 Query 2913 AACTGAGCTA 2922 | |||||||| Sbjct 1578 AGCTGAGCTA 1587 >seq77310 Length=2003 Score = 82.4 bits (90), Expect = 2e-11 Identities = 116/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 27944 ACAGCCAGTACGTTGTTGCATGAGGCTGGTTATCCTTCAGACTGGATTGAAAAG-GCTCT 28002 || || || || || |||||||||| || || | | |||||||| ||||| ||| | Sbjct 672 ACTGCGAGCACTCTGCTGCATGAGGCCGGATACAATACTGACTGGATCGAAAAATGCT-T 614 Query 28003 GGCACATGAGCAGAAAGGTGTGCGCGCCGTATATAACAAAGCGGAATA-CGCCAGACAGC 28061 |||| |||| |||||||| || | || |||||||||||||| ||||| || || || Sbjct 613 GGCAAATGAACAGAAAGGGGTAAGGGCGGTATATAACAAAGCTGAATATCGAGAG-CAAA 555 Query 28062 GCGCCTACATGTTGCAGCAGTGGTCCGATATGATTGAT 28099 | || | ||| | ||| | ||| | |||||||| ||| Sbjct 554 GAGCATCAATGCTACAGGATTGGGCTGATATGATAGAT 517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124817768607600