Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_007805.1 Length=39199 Score E Sequences producing significant alignments: (Bits) Value seq11766 288 2e-73 seq91618 150 4e-32 seq76029 114 3e-21 seq26185 105 2e-18 seq100388 95.1 3e-15 >seq11766 Length=389 Score = 288 bits (318), Expect = 2e-73 Identities = 279/355 (79%), Gaps = 3/355 (1%) Strand=Plus/Minus Query 6094 GGCAAGGGGCGCACCCTCAACATCCGTCCGGGCTTCGTTCTGACTCC-GGTGGCACTCGA 6152 ||||||| ||||||||| |||||||| |||| || ||| | || || |||||| || || Sbjct 373 GGCAAGGCGCGCACCCTGAACATCCGCCCGGCCTACGTCATCACCCCCGGTGGCGCTGGA 314 Query 6153 GGACAAGGCCAACCAGATCATCAACTCCGAGTCCGTGCCGGGCGCCGACGTCAATAGCGG 6212 |||||||| ||| | ||| | | || |||||| |||| | |||| ||| Sbjct 313 AGACAAGGCGCGGCAGCTGATCCGCAGTGCCTCGGTGCCGACCGCCCAGGTCACGC-CGG 255 Query 6213 CATCGTCAACCCGATTCGCGCATTCGCGCAGGTGATCGGCGAGCCGCGCCTGGACGATGC 6272 | | | |||||||||||| ||||| ||||||||||||| ||||| ||||||||||| Sbjct 254 CGTAGAGAACCCGATTCGCAACTTCGCCGAGGTGATCGGCGAACCGCGTCTGGACGATGC 195 Query 6273 CTCGGCGACCGCCTGGTATATGGCTGCCAAGAAAGGCTCTGACACCATCGAAGTGGCCTA 6332 |||||||| |||||||| ||||| |||||| | ||| ||||| |||| |||||||| Sbjct 194 GTCGGCGACTGCCTGGTACATGGCCGCCAAGCAGGGCAGCGACACG-TCGAGGTGGCCTA 136 Query 6333 CCTGGACGGCGTCGATACCCCGTACCTGGAGCAACAGGAAGGCTTCACTGTCGACGGCGT 6392 || |||||||||| ||||||||| ||||||| |||||||||||||| ||||||||||| Sbjct 135 TCTCAACGGCGTCGACACCCCGTACATGGAGCAGCAGGAAGGCTTCACCGTCGACGGCGT 76 Query 6393 GGCCAGCAAGGTGCGCATCGACGCCGGCGTGGCGCCGCTGGACTTCCGCGGGCTG 6447 ||||||||||||||| ||||| ||||||||| |||| || |||||| ||| Sbjct 75 GGCCAGCAAGGTGCGGATCGATGCCGGCGTGAGCCCGCGCGATAGCCGCGGCCTG 21 >seq91618 Length=322 Score = 150 bits (166), Expect = 4e-32 Identities = 212/295 (72%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 38580 GGGTTTGGTTCAAGGACGAAGCGGACGGGGCGCAGCCTGCATCGGTGTGGATTGCCCCCG 38639 |||| ||| |||||||||| |||||| | | ||| || | |||| | || |||| Sbjct 17 GGGTGTGGATCAAGGACGAGGCGGACAAGTCATCGCCCGCCACCAAGTGGCTGGCACCCG 76 Query 38640 AGGTCTACGGTGGGCCGCGTCGGAACAAGC-CGGCCGAGCTTCAGCTCAGGGCCAAGGGG 38698 ||||||||||||| || | |||||| | || ||| ||| | || || Sbjct 77 AGGTCTACGGTGGTGATCGCCCTGACAAGCGCAGCGAAGCGAT-GCTACGAGCGCGAGGC 135 Query 38699 ATCCTGCCCGAAGGTAAGTACGTGGTGCCTGGCGCCGGTGCTGATCTTGATCGCTACGGG 38758 |||||||||| || ||||||| |||||| || || || ||||| ||||||| ||||| Sbjct 136 ATCCTGCCCGCCGGAAAGTACGCGGTGCCAGGTGCAGGGGCTGACCTTGATCAATACGGC 195 Query 38759 AACATCAGGCGGGGTCAAGTGACCAGAGCGCTGAGCGGCATCCGCGGATTCACTCAGGCC 38818 ||||||| ||| || || |||||| |||||| |||||||| || ||| | || | Sbjct 196 AACATCAAGCGCGGCCAGCTGACCAAGGCGCTGTCAGGCATCCGAGGCTTCGGTGAGACG 255 Query 38819 GGGTACAACGCGAACGCGACCGATAGCAGACGGAGCAGGGCGAAGGGTAATGCTC 38873 ||||||||||| ||||| ||||| |||| || ||| ||| ||| | || |||| Sbjct 256 GGGTACAACGCCAACGCCACCGACAGCAAGCGCAGCCTGGCCAAGCGCAACGCTC 310 >seq76029 Length=443 Score = 114 bits (126), Expect = 3e-21 Identities = 164/222 (74%), Gaps = 12/222 (5%) Strand=Plus/Minus Query 21498 TCCCGCCCGTCGTAGTAGTAACCGACCCAGACCTTTCCTGACTTCATCGTCCGGGTACGC 21557 ||||| |||| ||||||||| |||| ||||| ||||| ||||||| ||||| ||| Sbjct 433 TCCCGGCCGTTGTAGTAGTAGCCGATCCAGATTTTTCCGGACTTCAGTGTCCGTTCGCGC 374 Query 21558 TTGATCATCCTGGGTGGCAGTCCCCGGTTCT-TGTTGCTCCGCGGTCTCAT--CATCTAA 21614 || | ||||| ||||| || | |||||| || | || ||| | ||| || || | Sbjct 373 TTCACCATCCGCGGTGGTAGGGCGCGGTTCCCTGCTT-TCTTCGGACGCATGTCAACTCA 315 Query 21615 CCCTGGACAGGTCCAGGCTCCACTTCTCGGTTGC----TTC-CATCGT-CGGCTTCACGC 21668 | | || || |||||| ||| |||| | ||| ||| || ||| ||| || |||| Sbjct 314 CTTTCGATAGATCCAGGGCCCAGGTCTCAGCTGCGGCATTCGCAGCGTTCGGTTTGACGC 255 Query 21669 CGGCCAGCTTCAGGCGGGCATATACGCGCCCAACTATCGGGC 21710 |||||||||||| ||||||||| ||||||||||| | ||||| Sbjct 254 CGGCCAGCTTCA-GCGGGCATAGACGCGCCCAACGA-CGGGC 215 >seq26185 Length=1059 Score = 105 bits (116), Expect = 2e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 26798 GACCGCCGCGAAGCTCGGCGTTGACCAAAGCACCGTGTCTGGATGGGTCCGGGGAAAGCA 26857 |||||||| | ||||| || ||||||||||| |||||||||||||| || || ||||| Sbjct 1008 GACCGCCGAGGCCCTCGGAGTCGACCAAAGCACTGTGTCTGGATGGGTTCGCGGCAAGCA 949 Query 26858 CGGGATGTCTCCTCTTGTCGCGAAGCGGGCTCAGGTTCTGACCGACGGAAAATTCAAGAA 26917 ||| |||||||| | || || ||||| ||| || || |||| ||| |||| || Sbjct 948 CGGCATGTCTCCGGTGGTGGCCAAGCGCGCTGAGAAGCTCACCGGCGGTTCCTTCAGCAA 889 Query 26918 AGAGGACCTGTGTCCGGCTTTCCCGTGG 26945 ||| ||||||| || | ||||| ||| Sbjct 888 GGAGCACCTGTGCCCCTCATTCCCCTGG 861 >seq100388 Length=968 Score = 95.1 bits (104), Expect = 3e-15 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 33668 CTGGCCAAGGAACTCGGCGTACCTGTGGTGGTGCTGGCGCAGCTCAACCGTGGGCCGAAG 33727 |||||||||||||| || || || ||| | | |||| ||||||||||||| || | || Sbjct 844 CTGGCCAAGGAACTGGGGGTGCCGGTGATCGCGCTGTCGCAGCTCAACCGCTCGCTGGAG 785 Query 33728 GCGCGGGGCAACAAGCGTCCGACCAAGAGCGACCTGCGTGACTCCGGGCAGATCGAG 33784 |||| ||||||||||||| ||| |||||||||||| |||||| ||| ||| Sbjct 784 CAGCGGCCCAACAAGCGTCCGGTCAACTCCGACCTGCGTGAATCCGGGGCGATTGAG 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125121298224600