Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq51865 158 1e-33 seq28556 127 2e-24 seq117378 120 3e-22 seq29103 107 2e-18 seq97857 105 6e-18 seq79110 95.1 1e-14 seq58811 84.2 2e-11 >seq51865 Length=821 Score = 158 bits (174), Expect = 1e-33 Identities = 324/473 (68%), Gaps = 14/473 (3%) Strand=Plus/Plus Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAG-CAGCACCGCGAC 46145 || ||| | ||||| || | |||||||| || ||||||| | | || | | | || Sbjct 354 CCCTGCATCCGCAAAAAGGCTGACTGGGCCCTGCGGTGGATCTCCGGACAAAAACTCCAC 413 Query 46146 TTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTT 46205 || ||| | ||| |||| || || || ||||| || |||| || |||| ||| Sbjct 414 CTTTGCCAACCGTCTGGTAGCGTTCGCTGCGGTGGAAGGAATCTTCTTCAGTGGCTCTTT 473 Query 46206 TGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGA 46265 ||| ||||||| | |||| | ||| ||||||||||||| || ||| |||||| Sbjct 474 CGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCACCTTTTCCAACGA 533 Query 46266 GCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCG 46325 ||| || ||||| ||||| ||| |||| || |||||||| || || || |||| Sbjct 534 GCTCATCTCGCGTGACGAAGGCATGCACACCGACTTTGCCTGCCTGCTCT-----TCTCG 588 Query 46326 CGTGCACGACAAGCTTGCGCCC---GACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGC 46382 | | | | |||| | | || ||| |||||| ||| ||| ||||| || | Sbjct 589 C-TCCTCAACAACCGCCCCTCCAAAGACGCCGTGCAAGCCATCATCACCGAGGCCGTCGA 647 Query 46383 CATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACG-CAC 46441 || ||||||||||| | | | ||| ||||| ||| ||||| |||||||||| ||| Sbjct 648 GATCGAGAAGGAGTTCCTGTCCGACGCCCTGCCTTGTGCGCTGCTCGGCATGAACGCCAC 707 Query 46442 AGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGC 46501 || |||||| | ||||| |||||||| || ||||| ||||| | | | || || | Sbjct 708 CCTC-ATGTGCCAGTACATTGAGTTTGTCGCCGACCGGCTGCT-GCTCTCCCTCGGCAAC 765 Query 46502 -CGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCT 46553 ||| | | | ||||| ||| || ||||| |||||| | |||||||| || Sbjct 766 ACGAGGTACTACCACGCCACCAACCCTTTTGACTTTATGGAGAACATCTCGCT 818 >seq28556 Length=388 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || || || | ||| ||||||||||||||||||||||| | ||| || Sbjct 68 CGAAGGACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAGAGGGTACGGCCA 127 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || |||||||| || ||| |||| | |||||||||||||||||| || ||||||||| Sbjct 128 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTG 187 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| ||| ||||| | || | ||||| | ||||| | || | || | | Sbjct 188 TCCTGGATCTTCGACTTGACATTGTCAATGGTATCCGAAGACTCTACTTCTAGCGTGATG 247 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||| || || || ||||| || ||||| Sbjct 248 GTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 282 >seq117378 Length=621 Score = 120 bits (132), Expect = 3e-22 Identities = 381/588 (65%), Gaps = 2/588 (0%) Strand=Plus/Plus Query 145102 GTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGT 145161 ||| || ||| |||| || || ||||||| |||||||| || || | | ||| || || Sbjct 15 GTTGGATGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAG-TCGAGGCAGT 73 Query 145162 GGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAG 145221 ||||||| || | || || || ||||| | |||||||| | |||| || | | || Sbjct 74 GGGCATGGG-GCGAGCAGCAAAGAGTTGCGAATGCCGTGCTCCCTGATCTCCGCTCTGAG 132 Query 145222 CGTACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCC 145281 ||| |||| ||||| | | ||| | || | |||||||||| |||| | ||| || Sbjct 133 AGTATCCCACTCCCACAAATCGGAAGGCTTAACATTCCACATGTCGAACTGGAGAATACC 192 Query 145282 CTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCA 145341 |||| |||||| ||| | |||| |||| ||| ||||| | |||| Sbjct 193 CTCGGAGGCGGGAGAGCCCTTGAAGGTGGAGTAAGGTCCCTGCTCCTTGGCCAACTCGAC 252 Query 145342 ACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGC 145401 | || |||||| || || || ||||| |||||| |||||||| || Sbjct 253 AGAGGCAGTCAGAGCAGCGTGGTAGATGGTCTCAAAGATTTGCTTGTTGAGCTCACGAGC 312 Query 145402 TTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCC 145461 ||| |||| ||||||||||||| | || |||||||| || ||||| | || Sbjct 313 TTCGGGAGACTCGAACGGCATGCGCAGAGCCAGGAACGCATCGGCAAGACCCTGGACACC 372 Query 145462 CACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATT 145521 || ||||| || || ||| |||||| || | | ||| || | ||| || | || Sbjct 373 AACACCGATAGGTCGGTGTCGCATGTTACTGTTGCGAGCCTCCTGAACAGGGTAGTGGTT 432 Query 145522 ACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTC 145581 || || || || |||||||| || || || |||| |||| | | | || | Sbjct 433 GACATCAATGATCTTGTTCAAGTTGCGGACAACCACCTGAGTAACCTCGTGGAGTTTCTT 492 Query 145582 AAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATT 145641 |||||| | || ||||||| | |||| || | ||| | || ||||| || Sbjct 493 GAAGTCATATCGGCCCTCGTCGTAGTCCACGTAGGCGGGCAGGGCAAGGGAAGCCAAGTT 552 Query 145642 ACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCA 145689 ||||| ||| ||| || | | | | ||||| | ||||| | ||| Sbjct 553 GCAAACGGCCACCTCATCAGGGGCACAGTATTCGATAATCTCAGTGCA 600 >seq29103 Length=1863 Score = 107 bits (118), Expect = 2e-18 Identities = 158/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATG-GTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||| || | ||| || || || || | | ||||||||||||||||||||||| || Sbjct 1062 CCACCTCGGAGACGAAGAACCAAGTGGACGCGTCGACTCCTTTTGAATGTTGTAGTCTGC 1121 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| |||||||| || || |||| | |||||||||||||| || Sbjct 1122 AAGAGTGCGGCCGTCCTCAAGCTGCTT-CCGGCA-AGATCAGGCGCTGCTGGTCCGGGGG 1179 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||||| | || | || |||| |||||||| Sbjct 1180 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGAC 1239 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA 131226 || | ||| | ||| || || || || || || |||||| Sbjct 1240 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 1279 >seq97857 Length=911 Score = 105 bits (116), Expect = 6e-18 Identities = 348/531 (66%), Gaps = 20/531 (4%) Strand=Plus/Plus Query 145631 GACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCAC 145690 || ||||| ||||| || || ||| || | | || |||| | || ||||| | ||| Sbjct 316 GAGGCCAAGTTACAGACAGCAACCTCATCTGGGGCGGTGTACTCAACAATCTCAGTGCAT 375 Query 145691 AAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCC 145750 || || || ||| || || ||||| | ||| || |||| | |||||| |||||| Sbjct 376 AAGTTCGAACTGCGGATAGTGCCGAGATTCTTCTGGTTGCTTTGCG-GTTGCAAGCGTCC 434 Query 145751 TTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAG 145810 ||||| |||||| | || |||||||| || | ||| | ||| | | | || Sbjct 435 TTGTAAAGCATGAAGGGATTACCAGTCTCAGTTTGAGCCTCGAGGATGGCA---TACGAG 491 Query 145811 -TCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTA--TTTCCTGTAGAGC 145867 | ||| || || || || | | || || || || |||| |||||| Sbjct 492 CTTCTGGGCGCGAACGGTCTCACGACCTTTGTTCTTTTTCTCATAACTTTC--GTAGAGG 549 Query 145868 TCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGC 145927 |||||||| | ||||||| || | || || ||||||| ||||||||||||||| Sbjct 550 GCCTCAAACTCATCACCGTAGACGTCCGCGAGACCAGGACACTCGTTGGGACACATCAGA 609 Query 145928 GACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTAC 145987 | ||| | || || | | ||| |||| ||| || | ||| || | |||||| ||||| Sbjct 610 GTCCACTCCCCATTCTCTTGGACACGCTTCATGAAGAGATCCGGGATCCACAGGGCGTAG 669 Query 145988 ATCAAGTCGCGCGCTTTGCAATCCTCAGC--ACCCATGTTTCGCTTCAAA--TTAAGCAC 146043 | |||||||| || || | | || | ||||| ||| | | || | | | Sbjct 670 AATAAGTCGCGAGC---GCGAACTTCCTCTTTGCCATGGTTC-TTACGAAGGTCCAAGAA 725 Query 146044 ACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG-- 146101 | | | || || |||||||| || || | |||| |||| ||||| || ||| Sbjct 726 GCCAAATATATCGGCGTGCCATGGCTCGAGGTAGATTGCGAATGCTCCGGGACGCTTGTT 785 Query 146102 -CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 |||||||| || |||| ||| || ||||||| ||||||| | |||||| Sbjct 786 ACCACCCTGATCGACGTAACGGGCCGTGTTGTTGTAGACGCGTAACATGGG 836 >seq79110 Length=913 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 146269 CGTCTCGTAGATGCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCAC 146326 ||| || ||||| || |||||||| || |||| ||| | | ||||||||| || || Sbjct 913 CGTGTCATAGATACCATCAATGCTGTCCTCCTTC--ATGTCAATCAGAAAGCAAGATGAC 856 Query 146327 ATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTT 146386 ||||||| | || || || || ||| | ||| ||| || || ||||| ||| Sbjct 855 ATCTGCGGCGAAGGGGTGCCGGCGTTGAAAAGCGTTGGGGAGGCATGAGTAAAGTACTTT 796 Query 146387 CGGCTCATC-ATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAA 146445 | ||| | || ||||||||||| || | || || || ||||| ||||| || | Sbjct 795 TGTGACATGTAGTCG-TACGTTTCGATGGCCTTTTCGATATCCTCGCCGTGAATACCGAC 737 Query 146446 AGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCAC 146484 |||||| ||||||| ||||||||| || ||||| || || Sbjct 736 AGCGACACGCATGATCATGTGTTGTGGGCGCTCGGCAAC 698 >seq58811 Length=295 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 145355 GCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCG 145414 || ||||| || || |||||| ||| | | || ||| | |||||| || |||| Sbjct 197 GCACCGAAGTAGATCGTCTCGAAAATATCCTCATTTAGCCGGCGCGCTTCGTCCGACTCG 138 Query 145415 TACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGC 145474 ||||||| ||||||| | || |||||||| |||||||| | |||| ||||||||| Sbjct 137 AACGGCATCCGCAGCATGATGAACGCATCGGCCAGCCCCTGCACACCCAGACCGATGGGC 78 Query 145475 CGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATT 145534 || || |||||||||| | || ||||| ||||| || ||||||||| Sbjct 77 CGGTGGCGCATGTTGCTCCGACGGGCTTCCTCGACCGGATAATAGTTGATGTCGATAATC 18 Query 145535 TTATTCAAGTTTCG 145548 || || | ||| || Sbjct 17 TTGTTGAGGTTGCG 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471244009152000