Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_008193.1 Length=30505 Score E Sequences producing significant alignments: (Bits) Value seq60962 113 9e-21 seq44536 93.3 8e-15 >seq60962 Length=2270 Score = 113 bits (124), Expect = 9e-21 Identities = 212/311 (68%), Gaps = 3/311 (1%) Strand=Plus/Minus Query 1257 TCTAAATGCGATGGCGCGAAATGTGCATACTTCATTGTCATTTCAATTGTTGAGTGTCCG 1316 |||||||| ||||| ||||| || || ||||||||||| ||| | ||| || Sbjct 2104 TCTAAATGTTCGGGCGCAAAATGCGCGTAACGCATTGTCATTTTAATGTCGGTGTGGCCA 2045 Query 1317 AGAATCTCTTTTAATACTAAAATGTTTCCCCCGTTCATCATAAAATGACTGGCGAAAGTA 1376 || | | || |||||||| ||||| |||||||||||||| ||||| || || ||| Sbjct 2044 AGCACGCGCTGCAAAACTAAAATATTTCCGCCGTTCATCATAAAGTGACTTGCAAAGGTA 1985 Query 1377 TGGCGTAAAACGTGCGTAAGCTGTCCTTTCGGCAAATCAATACCCGCCCGATCTACTGCG 1436 ||||| |||||||| || | ||| ||| ||||| ||||| || | | || | ||| Sbjct 1984 TGGCGCAAAACGTGAGTTAACTGGCCTGCTGGCAATTCAATTCCGGTTCTTTCCATCGCG 1925 Query 1437 TTTTCGAAAGCTTCATAAGCGTCACCGAACAATCGCCCAC---GACGTTGCGGCAGCATG 1493 |||||| |||| |||| || | ||| |||| | | ||| ||| Sbjct 1924 GAACGGAAAGCGCCATAGCATTCACTAAAGAGTCGGCCACTTTTAACATCCGGGAGCGCT 1865 Query 1494 TTATATAATTCAGGACTAATCGGAATTGTTCTATTTTTCCCGCTTTTCGTGTTGATGTAA 1553 | ||| | ||| ||||| ||||| || | |||||| | | || || ||||| ||| Sbjct 1864 TCATAGAGTTCCATGCTAATTGGAATAGTGCGATTTTTACGACCCTTAGTATTGATATAA 1805 Query 1554 GTGATTTTATA 1564 || |||||||| Sbjct 1804 GTTATTTTATA 1794 >seq44536 Length=546 Score = 93.3 bits (102), Expect = 8e-15 Identities = 106/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 1256 TTCTAAATGCGATGGCGCGAAATGTGCATACTTCATTGTCATTTCAATTGTTGA-GTGTC 1314 ||||||||| || || ||||| ||||| |||||||||||| || | || ||| | Sbjct 289 TTCTAAATGATCAGGGGCAAAATGGGCATATATCATTGTCATTTTTATA-TCGACGTGAC 231 Query 1315 CGAGAATCTCTTTTAATACTAAAATGTTTCCCCCGTTCATCATAAAATGACTGGCGAAAG 1374 ||||||| || || || ||||||||||| || |||||||| ||||| ||||| || | Sbjct 230 CGAGAATGTCGCGCAAAACCAAAATGTTTCCACCATTCATCATGAAATGGCTGGCAAATG 171 Query 1375 TATGGCGTAAAACGTGCGTA 1394 |||| | | |||||| ||| Sbjct 170 TATGTCTCAGAACGTGAGTA 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97343545696200