Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_008201.1 Length=34525 Score E Sequences producing significant alignments: (Bits) Value seq46921 134 3e-27 seq37016 107 4e-19 seq30370 107 4e-19 seq50247 102 2e-17 >seq46921 Length=376 Score = 134 bits (148), Expect = 3e-27 Identities = 244/351 (70%), Gaps = 7/351 (2%) Strand=Plus/Minus Query 567 CCAAAACCGCCGGTGTTATTTGGGATAATCCCCATCAGTTGTGGTGGCACACGGTGAGCA 626 || |||||||||||||| || ||||||| ||||||||| || || || || || || | Sbjct 354 CCGAAACCGCCGGTGTTGTTGGGGATAACCCCCATCAGCTGCGGCGGTACGCGATGCACG 295 Query 627 GCTAACACATCATCACGGCTCACGTTCTTGATATTAAAAAACTCATCTTTTGCCGACACA 686 || | || ||||| || |||||| || || || |||||||||||||| |||| ||| Sbjct 294 GCCAGCATGTCATCGCGTGACACGTTTTTAATGTTCAAAAACTCATCTTTAGCCGCCACC 235 Query 687 TCAGCAATCGGAATAATCTGTATTCCATCTTTCTTGCCGTTTGGTGCGTGGACGAACAAG 746 || | | ||| || ||||| || || ||||| || ||||| || || | |||| | Sbjct 234 TCTGACAGCGGGATGATCTGAATGCCGTCTTTTTTCCCGTTCGGACTGTACATAAACAGG 175 Query 747 TTTTTAAAATTCCCCACCCCTTTTGACTGCTTGA--GCTGCTGGCGAATATTTTCAACAT 804 || || || || || |||| || | || ||| ||| || || ||||| | Sbjct 174 TTGCGGAAGTTGCCAGGGCCCTTTGCGCTTTTCATTGC-GCT-GCGGATGTTATCAACGT 117 Query 805 CTTCTTGTTTTTGTGACGCATCGCTCATATAAAACACAAAGCCGGCGTGAGCT--CCATT 862 | | || | || | || ||| ||||||| | | ||| |||||||| ||| || || Sbjct 116 CCTGCTGGCTCTGCGCCGGGTCGGTCATATACATGATAAAACCGGCGTG-GCTGCCCGTT 58 Query 863 TAAAAAATACTTACGGCGAAACAGAGTAGCACTCTCATTTAACCACGCAGA 913 | ||||||| ||||||||||| || || |||||| | | |||||| Sbjct 57 AATGTAATACTTGCGGCGAAACAGCGTGGCCGACTCATTCAGCAGCGCAGA 7 >seq37016 Length=582 Score = 107 bits (118), Expect = 4e-19 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 567 CCAAAACCGCCGGTGTTATTTGGGATAATCCCCATCAGTTGTGGTGGCACACGGTGAGCA 626 || || ||||||||||| || ||||| |||||||| | ||| || ||||| || || | Sbjct 306 CCGAATCCGCCGGTGTTGTTAGGGATGATCCCCATTAATTGCGGCGGCACGCGATGCACG 365 Query 627 GCTAACACATCATCACGGCTCACGTTCTTGATATTAAAAAACTCATCTTTTGCCGACACA 686 || | || ||||| || |||||| |||||||| | |||||||||||| |||| || Sbjct 366 GCCAGCATGTCATCGCGCGACACGTTTTTGATATTCAGAAACTCATCTTTGGCCGCTACC 425 Query 687 TCAGCAATCGGAATAATCTGTATTCCATCTTTCTTGCCGTTTGG 730 || | | || || || || || || |||||||| ||||| || Sbjct 426 TCTGACAGAGGGATGATTTGAATCCCGTCTTTCTTCCCGTTCGG 469 >seq30370 Length=1420 Score = 107 bits (118), Expect = 4e-19 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 567 CCAAAACCGCCGGTGTTATTTGGGATAATCCCCATCAGTTGTGGTGGCACACGGTGAGCA 626 || || |||||||| || || ||||| ||||||||||| || || ||||| || || | Sbjct 1139 CCGAACCCGCCGGTATTGTTGGGGATTATCCCCATCAGCTGCGGCGGCACGCGATGCACG 1198 Query 627 GCTAACACATCATCACGGCTCACGTTCTTGATATTAAAAAACTCATCTTTTGCCGACACA 686 || | || ||||| || |||||| |||||||| | |||||||||||| |||| || Sbjct 1199 GCCAGCATGTCATCGCGCGACACGTTTTTGATATTCAGAAACTCATCTTTGGCCGCTACC 1258 Query 687 TCAGCAATCGGAATAATCTGTATTCCATCTTTCTTGCCGTTTGG 730 || | | || || || || || || |||||||| ||||| || Sbjct 1259 TCTGACAGAGGGATGATTTGAATCCCGTCTTTCTTCCCGTTCGG 1302 >seq50247 Length=1652 Score = 102 bits (112), Expect = 2e-17 Identities = 291/445 (65%), Gaps = 2/445 (0%) Strand=Plus/Minus Query 566 GCCAAAACCGCCGGTGTTATTTGGGATAATCCCCATCAGTTGTGGTGGCACACGGTGAGC 625 ||| || ||||||| ||| | || | || |||||||| || || || | || | | Sbjct 528 GCCGAAGCCGCCGGCGTTCTGGGGCACGATACCCATCAGCTGCGGCGGGATTCGCAGGCC 469 Query 626 AGCTAACACATCATCACGGCTCACGTTCTTGATATTAAAAAACTCATCTTTTGCCGACAC 685 || | || || || ||| | | | ||||||| || || || || || | || Sbjct 468 CGCGAGCATGTCGTCGCGGGTGATGCTCTTGATCGAGTTGAATTCGTCCTTCGCGGCTAC 409 Query 686 ATCAGCAATCGGAATAATCTGTATTCCATCTTTCTTGCCGTTTGGTGCGTGGACGAACAA 745 ||| | ||| || | ||| || || || ||||| ||||| || |||| |||||| | Sbjct 408 CTCACTCACCGGGATCAGCTGGATGCCGTCCTTCTTCCCGTTGGGCGCGTAGACGAAGAG 349 Query 746 GTTTTTAAAATTCCCCACCCCTTTTGACTGCTTGAGCTGCTG-GCGAATATTTTCAACAT 804 ||| || || ||| ||| || | | ||| || | ||| | |||| | Sbjct 348 GTTGCGGAAGTTGCCCGGCCCCTTGGCCGAGCGCAGC-GCGGTGCGCAGGGAGTCAATGT 290 Query 805 CTTCTTGTTTTTGTGACGCATCGCTCATATAAAACACAAAGCCGGCGTGAGCTCCATTTA 864 | |||| || || | ||||||| |||| ||||| | |||||||||||| || || Sbjct 289 CCTCTTCCTTCTGCGCCGCATCGGTCATGTAAAAGATGAAGCCGGCGTGACTGCCGTTGT 230 Query 865 AAAAATACTTACGGCGAAACAGAGTAGCACTCTCATTTAACCACGCAGATTGCAGGGCCG 924 | ||||| ||||| ||||| || || ||| || | | ||| || |||| ||| | Sbjct 229 TGTAGTACTTGCGGCGGAACAGCGTGGCCGACTCGTTGAGCAGCGCCGACTGCATGGCGG 170 Query 925 AAAGATATTGTGGCAAGCCGTAAATATCTTGATTAATATCAGGCTCAAGCAAGTGATAGA 984 || | | |||| |||||| || || || || || || | |||| ||| ||| ||| Sbjct 169 CGAGCCACTCGGGCATGCCGTAGATCTCCTGGTTGATGTCGGCCTCACGCAGGTGGCAGA 110 Query 985 TTGAGCCTTTGGCAAATTCGTGTTC 1009 | | ||| | ||| || |||||||| Sbjct 109 TGGTGCCCTGGGCGAACTCGTGTTC 85 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110187641068200