Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_008464.1 Length=60238 Score E Sequences producing significant alignments: (Bits) Value seq35206 632 8e-177 seq43257 123 1e-23 >seq35206 Length=1909 Score = 632 bits (700), Expect = 8e-177 Identities = 943/1316 (72%), Gaps = 43/1316 (3%) Strand=Plus/Plus Query 37270 TTTGTTCACTTGCTAATGCGTACATATTGAGTACAGAAT-ACAT-TATAAACTTGTGTAC 37327 || |||||||||| | ||||||||||||||||||||||| ||| ||| | |||||| Sbjct 144 TTCGTTCACTTGCCATTGCGTACATATTGAGTACAGAATGACAGCTATCGGAT-GTGTAC 202 Query 37328 AGGATATAAAGCATTGGCACTGAGCGACACCAAACTACGAGGCCTCTACGGAAAACCCTA 37387 |||| ||| | | |||| || ||||| |||||||| || | | |||| || ||||| Sbjct 203 AGGAAATATAACGATGGCCCTCAGCGATACCAAACTGCGCAGTATAAACGGCAAGCCCTA 262 Query 37388 CTCTGGCCCTGCTGAAATCACCGATGGTGACGGGTTAAGTGTGCGGATTACTCCAGCAGG 37447 | ||||| || || | ||||| | ||| || | || | ||| ||||| || || Sbjct 263 CAGCGGCCCGGCAGAGGTGACCGACGCTGATGGCCTGAGCGCGCGCATTACGCCTAATGG 322 Query 37448 AACTATCACGTTTCAGTACCGTTATCGCTGGAATGGTAAGCCAGTACGTCTTACTGTCGG 37507 || ||| | |||||||| || ||||||||| | |||||| ||||| | || | || Sbjct 323 TACCATCGC-TTTCAGTATCGCTATCGCTGGCAAA-TAAGCCTGTACGCATCACGCTTGG 380 Query 37508 GCGCTATCCGTCTACTTCACTGAAGGACGCGCGTGTTATCGTCGGTGAGATGCGCGCATT 37567 |||||||| | | || || || || ||||| || ||||| || ||||| |||| Sbjct 381 CCGCTATCCTGCGATGTCTCTCAAAGAGGCGCGCGTAGCGGTCGGCGAAATGCGGACATT 440 Query 37568 GTACATGAAGGGAGTTAACCCTAAAAATTATTTTGCGCCCAGTGACGGCGAACTGACATT 37627 ||||||| ||| ||||||| |||| |||||| | ||| ||| |||||||| | Sbjct 441 GTACATGCTGGG--TTAACCCCAAAACTTATTTGGTCGGCAGCAGCGGGGAACTGACGCT 498 Query 37628 AAAAGAATGCCTGGATCAGTGGTGGGATAAGTATGTTACTGATCTGAAACCCAATACACA 37687 | |||| ||||| ||| |||||||| | ||||| ||||| | || ||| || |||| Sbjct 499 ACAAGACTGCCTCGATGAGTGGTGGAACAAGTACGTTACCGGGCTAAAAGAAAACACACG 558 Query 37688 GACGCTTTACAGATCCGTCGTGTACAACACTATGTACACACAGTTTGAAGGCT-CGCCAG 37746 | || |||| || || ||||||||||| ||||||||||| ||| |||| | ||| | Sbjct 559 CATTCTGTACAAGTCAGTTGTGTACAACACCATGTACACACAATTT-AAGGATGTGCCGG 617 Query 37747 TTGCCAGTATCCCAGTATCGGCATGGGCTCGTTTCTTTGACAAACAAGAA-AGCCTCAAC 37805 | || | || | || ||| |||| | || || ||||| || ||| || | |||| Sbjct 618 TAGCAAACATAACTGTGTCGCTCTGGGTGCAATTTTTCGACAAGCAGGAACAGGC-CAAC 676 Query 37806 AAGAAAAAGGCTCGTGTTTTGTTGTTACAACTGCGTTCAGTTATTAACTGGTGTATCAGC 37865 ||||| || || | || || || | ||||| || |||| | ||||||| |||||| Sbjct 677 AAGAAGAAAGCCAGGGTACTGCTGCTGCAACTCCGATCAGCCA-GGACTGGTGCATCAGC 735 Query 37866 CGCCAGTTAATCCCATCATGCGAATTACTCAAGCTTAGTGTTAAGAATATTGGGAAAAAA 37925 |||||| | || || ||||| ||| | ||||| || || ||||| ||||| ||| ||||| Sbjct 736 CGCCAGCTTATTCCGTCATGTGAAGTGCTCAAACTCAGCGTTAAAAATATCGGG-AAAAA 794 Query 37926 CCAGATGTAGG-GAGTCGTGTACTTACCTATACGGAACTGGCAAAAATTTGGCTGGCGCT 37984 || ||| || ||| || || || ||||||| |||||||| ||||| ||||||||||| Sbjct 795 CCTGATACCGGTGAG-CGCGTTCTCACCTATAACGAACTGGCGAAAATCTGGCTGGCGCT 853 Query 37985 GGAGAACTCAAAAGTAGTTACTTCCAACAAGGTGTTACATCAATTGCTATTGCTATGGGG 38044 ||| ||| ||||| || | || || || | | || ||| |||| ||| | ||||| Sbjct 854 GGAAAACAATAAAGTCTTTTCCTCTAATAAAATCCTTCACCAAATGCTGTTGTTGTGGGG 913 Query 38045 GGCCAGACTTTCTGAGCTACGTCTCGCGACAGCCAG-TGAGTTCAACATGGAAGATTTGG 38103 |||| | ||||| || || || || | | || | ||| ||||||||||| ||| | Sbjct 914 GGCCCGCCTTTCAGAACTGCGGCTGTCTAACCCCTGCTGAATTCAACATGGATGATCTTA 973 Query 38104 TCTGGACAACCCCAAAAGAGCATTCAAAAATGGGGAATATTATCCGGCGTCCGGTATTCA 38163 ||||||| || ||| |||||||||||| ||||| || |||||| |||| || | ||| Sbjct 974 TCTGGACGACGCCAGCAGAGCATTCAAAGATGGGTAACATTATCAGGCGGCCTATTTTCG 1033 Query 38164 CTCAGGTTAAACCTTATATCGAGAGATTGCT--TAATG-----CGGGTTTTGATGTGCTA 38216 ||| | | || ||| | || || |||| |||| | |||| || Sbjct 1034 AACAGATACAGCCGTATGTTGAAAGGCTGCTCGCAATGAAAATCCGGTTATG-------- 1085 Query 38217 TTCCCCGGGCAGGAAATAGATAAACCTATTGATCGTTCGTCGGCTAATTTGTACATG--- 38273 || ||||| |||||| | || | | |||| ||||| || ||| ||| |||||||| Sbjct 1086 TTTCCCGGTCAGGAACTGGACACAGCTATAGATCGCTCATCGTGCAATCTGTACATGCGT 1145 Query 38274 AAAAAGTTAAGGGAGAAAATTGATATTCCTGAATGGAGAACGCATGATTTTAGGCGTTCT 38333 ||| | ||| ||||| |||||||| |||||| | ||||||||||| |||| | Sbjct 1146 AAACTGCGAAG---CAAAATCGATATTCCCGAATGGCGCACGCATGATTTCCGGCGCACC 1202 Query 38334 CTGGTAACGAATTTATCTGGGGAAGGAATTATGCCCCACGTCACTGAAAAAATGCTGGGG 38393 |||||||||||| | || | ||||||||| ||||||| ||||| ||||| ||||||||| Sbjct 1203 CTGGTAACGAATCTGTCAGAGGAAGGAATATTGCCCCATGTCACCGAAAAGATGCTGGGG 1262 Query 38394 CATGAACTTGGGGGAGTTATGGCCGTGTATAATAAACACGACTGGTTGTCGGAACAG--- 38450 |||||||| || || || ||||| ||||| || ||||| |||||| || || ||| Sbjct 1263 CATGAACTGGGCGGGGTAATGGCGGTGTACAACAAACATGACTGGCTGGAAGATCAGCGT 1322 Query 38451 AAAGATGCGTATGAGTTGTATGCTGATAAAATTTTCTGGCACGCTAAACAGCTCGGTTAA 38510 |||| | |||||| | || || ||||||||||||||||||| ||| ||| |||||||| Sbjct 1323 AAAGGT---TATGAGCTCTACGCGGATAAAATTTTCTGGCACGTTAAGCAGATCGGTTAA 1379 Query 38511 TTCCTCCGGCTTTAAGCCATTGTTCAACGGCCTGACGACTATATCGCGCCGGATGA 38566 | || || | | || ||| || || || || || || || ||||||||| Sbjct 1380 TACCGCCTTCATCAATCCACCTTTTGACCGCTGCGCGGCTGTAACGTGCCGGATGA 1435 >seq43257 Length=1618 Score = 123 bits (136), Expect = 1e-23 Identities = 189/267 (71%), Gaps = 7/267 (3%) Strand=Plus/Minus Query 5510 GCATGGGTGGAGAAAAACATCAAAGTGCCATTGAGCGAACCCCAGAAAGCGGGGATCGCG 5569 || ||||| || |||| | | | || ||| ||| |||||| ||||| | || || ||| Sbjct 873 GCCTGGGTAGATAAAA-CGTACACGTTCCACTGACCGAACCGCAGAAGGTTGGCATAGCG 815 Query 5570 TCATTCTGTCCGTACAACATTGGTCCCGGTAAGTGTTTCCCGTCGACGTTTTAT---AAA 5626 ||||||||||||| |||||||| |||||||| || | || || ||||| || ||| Sbjct 814 TCATTCTGTCCGTGGAACATTGGCCCCGGTAAATGCCTGCCATCAACGTTCTACCGGAAA 755 Query 5627 CGAATTAATGCAGGTGATCGCAGGGGAGCGTGTGAGGCGATTCGCTGGTGGATTAAGGAC 5686 | || | ||||| |||||| ||| || |||| | ||| | ||||| ||| Sbjct 754 CTAA---ACGCAGGCGATCGCCTGGGTGCATGTGCAGAGATAAAGCGCTGGATATTCGAC 698 Query 5687 GGTGGCAGAGACTGCCGTATTCGTTCAAACAACTGCTACGGTCAGGTATCCCGTCGTGAC 5746 || || | ||| ||||| ||||| || || ||| ||||| || || ||| |||||| Sbjct 697 GGCGGGAAAGATTGCCGCATTCGCTCTAATGGCTGTTACGGGCAAGTTATCCGCCGTGAC 638 Query 5747 CAGGAGAGCGCGCTGTCATGCTGGGGT 5773 ||||| | ||| ||||||||||| Sbjct 637 CAGGAATCAGAGCTCACATGCTGGGGT 611 Score = 89.7 bits (98), Expect = 2e-13 Identities = 183/261 (70%), Gaps = 12/261 (5%) Strand=Plus/Minus Query 6933 ACCATTACTGATATGCAGCAGCGCCAGCGTGATGTTGCTGCACTTGATGCCAGATACTCG 6992 || |||| |||||||||| ||||||||| |||||||| |||||||||| |||| | Sbjct 444 ACAATTAACGATATGCAGCGTCGCCAGCGTTCAGTTGCTGCGCTTGATGCCAAATACACA 385 Query 6993 AGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTTCGCGCT-GACGTTGCCGCTGG 7051 | |||| | |||||| | ||| | || || | | ||| || |||| |||| Sbjct 384 AAGGAACTTAACGATGCTAAAGCA-ACTATCAATCAGCTTAAGCTTGATGTTGATTCTGG 326 Query 7052 TTACCGCAGCCTGCGGATCAACGCCACCTGT---CCAGGTCCCGTGCGTGAAGCCACCGG 7108 | ||||| ||| |||| ||||||||| |||| | || || | ||||| | Sbjct 325 CAAGCGCAGGTTGCAACTCAATGCCACCTGTAAGCCAGC-CGCGACCGGCA--CCACCAG 269 Query 7109 CACCGCCC-GCGTGGATAATGCAACCGGCCCCCGACTGG-CAGACACCGCTGAACGGG-A 7165 | || || || ||| | |||| || |||| |||| ||||| ||||| |||||| | Sbjct 268 CGCCACCAAGCATGGCTGATGCTTCCA-CCCCAGACTTTACAGACTCCGCTCAACGGGGA 210 Query 7166 TTATTTCACCCTCAGAGAGAG 7186 |||||| ||||||||||| || Sbjct 209 TTATTTTACCCTCAGAGATAG 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192341925720000