Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2641 154 1e-32 seq28556 118 9e-22 seq29103 84.2 2e-11 seq19335 82.4 6e-11 >seq2641 Length=263 Score = 154 bits (170), Expect = 1e-32 Identities = 159/207 (77%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 22239 TTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAA 22298 ||| ||||| || || |||| |||||||| ||| | | ||||| | ||| || |||| Sbjct 41 TTTGACCGGCAAGACTATCACCCTTGAAGTTGAATCTTCGGATACTATCGACAATGTCAA 100 Query 22299 ACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGG 22358 | | ||||||||||||||||||||||||| |||||||||||||| || || ||||| || Sbjct 101 A-ACCAAATTCAAGACAAGGAGGGTATTCCCCCCGATCAACAACGACTCATCTTTGCTGG 159 Query 22359 CAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCAT 22418 || ||||| || ||| || ||| | |||||||||||||||| |||||||| || | Sbjct 160 TAAGCAGTTGGAAGATGGTCGAACCCTTGCCGATTACAACATTCAGAAAGAATCTACTCT 219 Query 22419 ACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| | ||| | ||| | || || || Sbjct 220 GCATCTGGTTCTTCGACTTCGTGGTGG 246 >seq28556 Length=388 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || |||| || ||||| || | | Sbjct 282 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACGCTAGAAGTAGAGTCTTCG 223 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || || || ||||| || || ||||| || || || Sbjct 222 GATACCATTGACAATGTCAAGTCGAAGATCCAGGACAAAGAAGGCATTCCTCCGGACCAG 163 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| || ||| | || ||| ||| ||| |||| ||||||||| Sbjct 162 CAGCGTCTCATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGTACCCTCTCTGATTACAAC 103 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || ||| | || || || | ||| | || || ||| Sbjct 102 ATTCAAAAGGAGTCTACCCTTCACTTGGTCCTTCGACTTCGTGGCGGT 55 >seq29103 Length=1863 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 22221 GCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGA 22280 || || ||| || || || | || || || || |||| ||||| || || || |||| Sbjct 1285 GCCAAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGA 1226 Query 22281 TACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACA 22340 || | ||| || |||| || || || ||||||||||| ||||| || || || || Sbjct 1225 CACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCA 1166 Query 22341 ACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACAT 22400 || || || ||||||| || ||| | ||||| |||||| | | || |||||||| Sbjct 1165 GCGCCTGAT-CTTGCCGG-AAGCAGCTTGAGGACGGCCGCACTCTTGCAGACTACAACAT 1108 Query 22401 TCAAAAAGAATCCAC 22415 |||||| || || || Sbjct 1107 TCAAAAGGAGTCGAC 1093 >seq19335 Length=805 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/211 (70%), Gaps = 9/211 (4%) Strand=Plus/Plus Query 129133 ACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAAC 129192 ||||| || ||||| || | || || || ||| ||||| |||| | |||||||| Sbjct 550 ACTTGGAATTCACCAGCAAGTACACGACGGGAGTATATGTTTGAGGTGTATGGCTCAAAA 609 Query 129193 GATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGC 129252 | ||||||||||| | || |||| ||| | ||| || |||||| || | | ||| Sbjct 610 CACTCATTGTTGCCCAGGATCTGAGACGTAGACGCTGT-GGCATGGGTGCAATGAGAAGA 668 Query 129253 GAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCAC--ATCG 129310 ||||| || | ||| ||||| | ||||| ||||| | | |||||||||| |||| Sbjct 669 GAGTTGCGGACACCATGCTG---AGCATCTTTCTTTAA-AGAGGCCAGTCCCACAGATCG 724 Query 129311 ATGTGGGTGTGTGATTCCACAAGTCGTATTG 129341 || || ||| | |||||| ||| ||||| Sbjct 725 --GTAGGAGTGACACTCCACATGTCATATTG 753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419061458819500