Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_009016.1 Length=38197 Score E Sequences producing significant alignments: (Bits) Value seq50247 381 1e-101 seq42978 114 3e-21 >seq50247 Length=1652 Score = 381 bits (422), Expect = 1e-101 Identities = 480/645 (74%), Gaps = 18/645 (3%) Strand=Plus/Plus Query 21029 TGGATGGGTGGCAAGCGCCGCCTGGCTAAACACATCCTGCCAGAGTTCCCAGAGCACGAG 21088 |||||||| ||||||||||| || || | | ||| | || |||||| ||||| Sbjct 696 TGGATGGGCGGCAAGCGCCGTCTCGCCGACCGAATCTTCCCGCTGTTCCCCAAGCACAGC 755 Query 21089 TGCTATGTGGAGCCGTTCTGTGGGGCCGCTGCCCTGTTTTTTATGAA---GATGCCGACC 21145 ||||| || ||||| ||| ||||| || || |||| || | | | || || Sbjct 756 TGCTACGTCGAGCCCTTCGCCGGGGC-GCCGCGTTGTTCTTCCTTCGCCCGGTACCCGCC 814 Query 21146 AAGGTTGAAGTCATCAACGACGTGAACAGCGACCTGGTTAACCTGTACCGCGTGGTGCAG 21205 |||| || || |||||||||| ||| |||||||||| || || ||||| || || ||| Sbjct 815 GAGGTGGAGGTGCTCAACGACGTCAACGGCGACCTGGTCAATCTCTACCGGGTCGTCCAG 874 Query 21206 CATCACCTCGAGGAGTTCGTCCGCCAGTTCAAATGGGCGCTTATCAGCCGCGAGATGTTC 21265 || ||||| ||||||||||||||||||||||| |||||||| | | |||| || | ||| Sbjct 875 CACCACCTGGAGGAGTTCGTCCGCCAGTTCAAGTGGGCGCTGAGCTCCCGCCAGGTCTTC 934 Query 21266 AAGTGGCTGGACGAT-ACG--CCCGTCGAGACCCTGACCGATATTCAGCGTGCTGCCCGG 21322 || |||||| | ||| ||| |||| ||||| |||||||| || ||||| || || || Sbjct 935 AAATGGCTGCA-GATGACGAACCCG--GAGACGCTGACCGACATCCAGCGCGCCGCACGC 991 Query 21323 TTCTATTACCTGCAGCAGATGGGCTTCGGCGCCAAGATTACCGGCCGCACCTTTGGCACG 21382 ||||| |||||||||||| || ||| || | |||| | |||||| || || || || Sbjct 992 TTCTACTACCTGCAGCAGTCGGCCTTTGGTGGCAAGGTCGCCGGCCAGACGTTCGGTACC 1051 Query 21383 GCCACCACTACGCCGCCAAAACTGAACCTGCTGCGCCTCGAGGAGACGCTAAGCCAG--G 21440 ||||| || |||||||| |||||||||||||||||||||||||| || | | | | Sbjct 1052 GCCACGACCACGCCGCCTGGCCTGAACCTGCTGCGCCTCGAGGAGACCCT--GTCGGCTG 1109 Query 21441 CGCACCTACGCCTGAGCCG-TGTTTACGTTGAGCACCTGGACTGGCAGGCGTGCATGGAA 21499 ||||||| ||||| | ||| || || || |||||||||| |||||||| |||||| Sbjct 1110 CGCACCTGCGCCT-ATCCGAGGTCTATGTCGAGCACCTGGCCTGGCAGGACTGCATGCGC 1168 Query 21500 AAGTACGACCGACCGCACACCCTGTTTTACCTCGACCCGCCGTACTGGCAGACCGAGGGC 21559 || |||||||| |||||| || || ||| | |||||||| |||||| |||| || || Sbjct 1169 AAATACGACCGGGAGCACACGCTCTTCTACATGGACCCGCCCTACTGGGAGACGGAAGGG 1228 Query 21560 TACGGTGTCGACTTCCCCTTCGAGCAATATGAGCGCATGGCTGAGATGGCCAGGAC-GGT 21618 ||||| | |||| ||||||||| |||||| ||||| ||| || || | | | Sbjct 1229 TACGGCATGCCCTTCGGCTTCGAGCAGTATGAGGAGATGGCCCGGAT-GCTGGGCCAGCT 1287 Query 21619 GAAGGGTAAGGTGGTGATCAGCATCAACGACCACCCGGATATCCG 21663 ||||| |||| | | |||||| ||||||| ||||||| ||||| Sbjct 1288 CAAGGGCAAGGCGATCATCAGCCTCAACGATCACCCGGCCATCCG 1332 >seq42978 Length=612 Score = 114 bits (126), Expect = 3e-21 Identities = 156/214 (73%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 21139 GCCGACCAAGGTTGAAGTCATCAACGACGTGAACAGCGACCTGGTTAACCTGTACCGCGT 21198 |||| | ||||| ||||| |||||||| ||| | |||| ||||| ||| || ||||| Sbjct 401 GCCGGCGAAGGTCGAAGTGATCAACGATGTGCATGGCGAGCTGGTGCGCCTCTATCGCGT 460 Query 21199 GGTGCAGCATCACCTCGAGGAGTTCGTCCGCCAGTTCAAATGGGCGCTTATCAGCCGCGA 21258 ||| | ||||| || |||||| | ||||||| | ||||| || | |||||||| Sbjct 461 TGTGGCCAACCACCTGGACGAGTTCATGCGCCAGTCCGG-TGGGCACTGACGAGCCGCGA 519 Query 21259 GATGTTCAAGTGGCTGGACGATAC-GCCCGTCGAGACCCTGACCGATATTCAGCGTGCTG 21317 |||||||||||| | | | | | || | || || || || || ||||||||||| | Sbjct 520 AATGTTCAAGTGGGCGCA-GCTCCAGCACCCTGAAACGCTCACTGACATTCAGCGTGCGG 578 Query 21318 CCCGGTTCTATTACCTGCAGCAGATGGGCTTCGG 21351 | ||||||| |||||||||| || |||||| Sbjct 579 CTCGGTTCTTCTACCTGCAGCGCTTGTCCTTCGG 612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121919859527400