Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq51865 215 1e-50 seq8712 183 6e-41 seq97857 158 2e-33 seq44974 132 9e-26 seq41695 109 1e-18 seq95708 95.1 2e-14 seq58811 93.3 8e-14 >seq51865 Length=821 Score = 215 bits (238), Expect = 1e-50 Identities = 333/468 (71%), Gaps = 8/468 (2%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691 ||||||||| || ||||| |||||||| || |||||| | | | | | || Sbjct 354 CCCTGCATCCGCAAAAAGGCTGACTGGGCCCTGCGGTGGATCTCCGGACAAAAACTCCAC 413 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 || | | | | |||||||| || | || || || || ||||||||| ||| | || Sbjct 414 CTTTGCCAACCGTCTGGTAGCGTTCGCTGCGGTGGAAGGAATCTTCTTCAGTGGCTCTTT 473 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 |||||||||||||||||||||| || || || |||||||| |||||||| || |||| Sbjct 474 CGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTC-ATGCCCGGCCTCACCTTTTCCAACG 532 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 | |||||| | ||||| || |||| | |||||||||||||| || |||||| | Sbjct 533 AGCTCATCTCGCGTGACGAAGGCATGCACACCGACTTTGCCTGCCTGCTCTTCTCG---C 589 Query 42871 ACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930 ||||| || ||||| || || || | ||||||||||| |||||||| |||| Sbjct 590 TCCTCAACAACCGCCCCTCCAAAGACGCCGTGCAAGCCATCATCACCGAGGCCGTCGAGA 649 Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGAC 42989 |||||||||||||||| | | | ||||| ||| | ||| ||||||||||| | | Sbjct 650 TCGAGAAGGAGTTCCTGTCCGACGCCCTGCCTTGTG-CGCTGCTCGGCATGAACGCCACC 708 Query 42990 CTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC 43049 ||||||||| ||||||| ||| |||||||||| || ||| | | || || Sbjct 709 CTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGGCTGCTGCTCTCCCTCGGCAACACG 768 Query 43050 CGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCG 43097 | |||| || | | ||| || ||||||||||||||||||||| Sbjct 769 AGGTACTACCACGCCACCAACCCTTTTGACTTTATGGAGAACATCTCG 816 Score = 109 bits (120), Expect = 1e-18 Identities = 173/246 (70%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 42342 GCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAA 42401 |||||||||||||| || |||||||| || |||| | || | || | |||| Sbjct 4 GCCGAGGAGATTGATCTCTCCAAGGACCTCCACGACTGGAACAAAC-GACTAACGACGAC 62 Query 42402 AAG---TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAAT 42458 || || ||| || || | || |||||||| |||||||| |||||||| ||||| Sbjct 63 GAGCGCTTCTTCATCTCCCACGTCCTCGCCTTCTTTGCCGCCTCGGACGGCATCGTCAAC 122 Query 42459 GAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTAC 42518 |||||| ||| | | ||| | ||||| || | |||||||||||||||||| Sbjct 123 GAGAACTTGGTCGAGCGCTTCTCTAGCGAGGTACAAATCCCAGAGGCGCGCTGCTTCTAC 182 Query 42519 GGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACG 42578 ||||||||||| || |||||||| ||||| ||| |||| | || || |||| Sbjct 183 GGCTTCCAGATCATGATGGAGAACGTCCACTCGGAGACGTACTCGTTGCTCATCGACACC 242 Query 42579 TACATC 42584 |||||| Sbjct 243 TACATC 248 >seq8712 Length=1748 Score = 183 bits (202), Expect = 6e-41 Identities = 468/703 (67%), Gaps = 12/703 (2%) Strand=Plus/Plus Query 244970 GGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATC 245029 |||||||||||| |||| |||||| | | || | || |||||| | ||||| ||| Sbjct 134 GGGCACATGAGAGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAACAAATCGGGAATC 193 Query 245030 CAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGC 245089 || || || |||||||||| | || | || ||| ||| |||||| | ||| Sbjct 194 CATAGAGCAAGGAAGAGGTCACGGGCACGAACTTCCTCCTTGCCGTGGTTCTTTCGCAGG 253 Query 245090 TCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGC 245149 || | || ||||| ||||| ||||||| ||||||| ||| | | | || || || Sbjct 254 TCGAGGAACTCAAACACGTCTGCGTGCCACGGCTCCAGGTAAATGGGCAAAGCACCAGGT 313 Query 245150 CGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGC 245209 ||||||||||| |||||||| || || || |||||| | ||| || | || Sbjct 314 CGCTTGTTGCCACCCTGGTCGACGTATCTGGCGGTGTTGTTGAACACGCGAAGCATGGGA 373 Query 245210 ACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTG 245269 || | |||||| ||| |||||||||||| ||||| | ||| || | | | | | Sbjct 374 ACGACGCCGTTTGAGGTGCCGTTGGTGCCGGCAATGTACGAGCCAGTGGCACGAATGCGG 433 Query 245270 CTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTG 245329 || | || ||| | ||||| || ||||||||| | |||||| || ||| |||| Sbjct 434 TGGACGTTCAGGCCGATGCCGCCAGCCATCTTGGAGATCATGGCGCACGTC-TGAGGGTG 492 Query 245330 TCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGG 245389 || ||||| || |||||||| ||||| || || || |||||||| ||||||| | Sbjct 493 TCATAGATGCCTTCGATGCTGTCATCCTTCA-GTCGACAAGGAAGCAGGATGACAGCT-G 550 Query 245390 GGCTTGGGGC-TGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGA 245448 | ||| ||| | | | |||||| || ||||| ||||||||| ||| | |||||| Sbjct 551 GCATTGTGGCGTACCAGCGTTGAATAGTGTGGGCGAGGCGTGGGTGAAGAATTTGCTCGA 610 Query 245449 GAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCA 245508 | || ||| || | || | | || | |||||| || ||| | ||| Sbjct 611 CATGAGGTTGTAGGTTTCCAGGACACGCTCCAGGTTGTCTCCCCAGATACCGACGGCAAC 670 Query 245509 CCTCATGAGGGTGTGCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGTA 245565 | ||| | ||||||| || |||| || || | | | |||||| | || Sbjct 671 ACGCATAATCATGTGCTGTGGTCGCTCGACAATCTTGCCGTTGAG---CTTGAGGAGATA 727 Query 245566 GGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGAC 245625 ||| ||||| || |||||||| ||||||||| |||| ||||| || || | Sbjct 728 GGATCGCTCCAGAGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCTCTGTCGTAGACAAT 787 Query 245626 GGCTGCGTCGAGTCTCTCGGCGTGCTTC-TGACTGACCTCGTA 245667 ||| | ||||||| ||| ||||||| |||| | |||||| Sbjct 788 GGCAGAGTCGAGTTCCTCCTTGTGCTTCATGAC-GCACTCGTA 829 >seq97857 Length=911 Score = 158 bits (174), Expect = 2e-33 Identities = 334/491 (68%), Gaps = 13/491 (3%) Strand=Plus/Plus Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 ||||| ||| ||||| || ||||| || | | |||||||| |||||||| ||||| | Sbjct 318 GGCCAAGTTACAGACAGCAACCTCATCTGGGGCGGTGTACTCAACAATCTCAGTGCATAA 377 Query 244747 GTT---ACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCG-TTGCAGGCGT 244802 ||| ||||| ||| ||||| || | || || ||| ||| ||| ||||| |||| Sbjct 378 GTTCGAACTGCG---GATAGTGCCGAGATTCTTCTGGTTG--CTTTGCGGTTGCAAGCGT 432 Query 244803 CCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGA 244862 ||||||| ||||||||||| || ||||| || || |||||| | | | || Sbjct 433 CCTTGTAAAGCATGAAGGGATTACCAGTCTCAGTTTGAGCCTCGAGGATGGCATAC--GA 490 Query 244863 GGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGG 244922 | | | || || ||| ||| | ||| || | ||| || | ||| |||| Sbjct 491 GCTTCTGGGCGCGAACGGTCTCACGACCTTTGTTCTTTTTCTCATAACTTTCGTAGAGGG 550 Query 244923 CCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGA 244981 |||| ||||| || |||| || | || || || ||| || ||| ||||| ||| Sbjct 551 CCTCAAACTCATCACCGTAGACGTCCGCGAGACCAGGACAC-TCGTTGGGACACATCAGA 609 Query 244982 CTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGG 245041 ||||||| || || | ||| | || ||||||||| || |||||||| ||||| | | Sbjct 610 GTCCACTCCCCATTCTCTTGGACACGCTTCATGAAGAGATCCGGGATCCACAGGGCGTAG 669 Query 245042 AAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCA 245101 || | ||| | | | || || |||| |||||| | || ||||| ||| || Sbjct 670 AATAAGTCGCGAGCGCGAACTTCCTCTTTGCCATGGTTCTTACGAAGGTCCAAGAAGCCA 729 Query 245102 AAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCT 245161 || | ||| ||||||| ||||| | ||||| |||| || ||||| |||||||| || Sbjct 730 AATATATCGGCGTGCCATGGCTCGAGGTAGATTGCGAATGCTCCGGGACGCTTGTTACCA 789 Query 245162 CCCTGGTCCAC 245172 ||||| || || Sbjct 790 CCCTGATCGAC 800 >seq44974 Length=881 Score = 132 bits (146), Expect = 9e-26 Identities = 308/447 (69%), Gaps = 18/447 (4%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC-ATCTTC 42764 ||||||| || |||||||||| || ||||||||| || ||||| |||| | |||||| Sbjct 714 TGGTAGCTTTCGCCGCCGTCGAAGGTATCTTCTTCAGTGGTGCCTTTGCCTACTATCTTC 655 Query 42765 TGGCTCAAGCAGAAGGTGTC-GATG-CCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 ||||||||| || | ||| |||| ||||||||||||||||| ||||| || ||| | Sbjct 654 TGGCTCAAGAAGCGTG-GTCTGATGTCCCGGACTCACCTTCTCCAACGAGCTAATCTCCC 596 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA-C 42881 | || || || |||| | || ||||| ||||| ||| ||| ||| | | ||| | Sbjct 595 GCGATGA-GGTTTGCACACTGATTTTGCATGCCTGCTGCACTC---TCACATGAAGCATC 540 Query 42882 AAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAG 42941 ||| | ||| | | | || || ||||| || || || |||||| | ||| Sbjct 539 GCGCCAGC-AAGCAAATCATTCAGGAAATTATCACAGATGCTGTCACCATCGAGCAAGAG 481 Query 42942 TTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAA--CCACGACCTCATGTGCA 42999 ||| | || || | |||| | || |||| ||||| ||||| | ||| Sbjct 480 TTCTTGACAGAGGCATTGCCATGCGCTCTCCTCGGTATGAACGCCACG--TTGATGAAGC 423 Query 43000 AGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTC-AGCCGCCTCTA 43057 ||||||| | | ||||||||| | ||||| || || ||||| | || | | || Sbjct 422 AGTACATTGAATTCGTCGCCGATCGCCTCCTGGTTGCA-CTGGGTAACGAGAAG-GTGTA 365 Query 43058 CAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTT 43117 ||| || | |||||| || || ||||||||||| || | | |||||||| ||||| Sbjct 364 CAAGACTGCCAACCCCTTTGATTTCATGGAGAACATTTCCCTAGGCGGCAAGACGAACTT 305 Query 43118 TTTCGAGAAGCGCGTCGCCGACTACCA 43144 || |||||||| |||| ||| || || Sbjct 304 CTTTGAGAAGCGAGTCGGCGAGTATCA 278 >seq41695 Length=397 Score = 109 bits (120), Expect = 1e-18 Identities = 175/248 (71%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 42607 GGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCA 42666 ||||| | || ||||| || ||||| || ||| | |||| ||||| || ||||| || Sbjct 355 GGCTGCTGAATGCCATCGATACGATCCCGTGCGTTCAGAAAAAGGCCGAGTGGGCTCTGC 296 Query 42667 ACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCG 42726 ||| ||||| | ||| | |||| |||| ||||| | || ||| | | ||| | Sbjct 295 GCTG-ATCGATA------ACGGTTCATTCGCCGAGCGGCTGATTGCGTTTGCGGTCGTTG 243 Query 42727 AGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGT-CG 42785 |||| || ||||||||||| | ||| ||| |||| |||||| ||| | | || || | Sbjct 242 AGGGGATTTTCTTCTCGGGATCGTTCTGCTCGATCTACTGGCTGAAG-AAACGGGGTATG 184 Query 42786 ATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGAC 42845 ||||| || || |||||||||| || || ||| | || || |||||||| | || Sbjct 183 ATGCCGGGCCTTTCCTTCTCGAATGAGCTTATCTCGCGCGATGAAGGGCTGCACCGCGAT 124 Query 42846 TTTGCCTG 42853 || ||||| Sbjct 123 TTCGCCTG 116 >seq95708 Length=954 Score = 95.1 bits (104), Expect = 2e-14 Identities = 176/251 (70%), Gaps = 8/251 (3%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| |||||| ||||| |||||||| || |||| || Sbjct 338 ATGTACAAGAAGGCCGAGGCTTCCTTCTGGAC-GCCGAAGAGATTGATCTCTCCAAAGAT 280 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAAAAACATACT 42424 | || | | ||| || |||||| || |||| || | ||| || |||| || Sbjct 279 -CTGCACGATTGGAACAACCGTCTGAACGACGACGAGAAATACTTCATCTCCCACATCCT 221 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 || |||||||| |||||||||||||| ||||| |||||| ||| | |||| Sbjct 220 CGCATTCTTCGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGAGCGTTTCAGCGG 161 Query 42485 AGAGGTGC-AGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 |||||| | ||| | || || || ||||| ||||| |||||||| || || ||| Sbjct 160 AGAGGTCCAAGTGC-CAGAAGCTCGTTGCTTTTACGGATTCCAGATCATGATGGAAAACA 102 Query 42544 TGCACTCTGAG 42554 | ||||| ||| Sbjct 101 TCCACTCGGAG 91 >seq58811 Length=295 Score = 93.3 bits (102), Expect = 8e-14 Identities = 141/197 (72%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 244401 CGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGC---CTT-GCCGCAGGTG 244456 || ||||||| |||||||| || ||| | ||| | || ||| ||| | | | | Sbjct 193 CGAAGTAGATCGTCTCGAAAAT-ATCCT---CATTTAGCCGGCGCGCTTCGTCCGACTCG 138 Query 244457 AAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGT 244516 || || || | || ||| ||||| | |||||||| |||||||| || | |||||||| Sbjct 137 AACGGCATCCGCAGCATGATGAACGCATCGGCCAGCCCCTGCACACCCAGACCGATGGGC 78 Query 244517 CTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACC 244576 | ||| ||| ||||| || |||||| || || ||| ||||| |||||| | | Sbjct 77 CGGTGGCGCATGTTGCTCCGACGGGCTTCCTCGACCGGATAATAGTTGATGTCGATAATC 18 Query 244577 TTGTTGAGGTTGCGGGT 244593 ||||||||||||||||| Sbjct 17 TTGTTGAGGTTGCGGGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942801107528000