Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_009235.2 Length=48674 Score E Sequences producing significant alignments: (Bits) Value seq20698 414 3e-111 seq58269 286 1e-72 seq47989 253 6e-63 seq74519 219 1e-52 seq60375 194 5e-45 seq63426 134 4e-27 seq52587 127 6e-25 seq55672 104 7e-18 >seq20698 Length=617 Score = 414 bits (458), Expect = 3e-111 Identities = 417/541 (77%), Gaps = 1/541 (0%) Strand=Plus/Plus Query 680 TACAAATTTGACCCGGCAAAAGCGGAAAAGAAGCTGCGGCTGATTCAGCTTTTGCCGCAT 739 ||||| || |||||||| || || || ||||||||| |||||| ||||| |||| || Sbjct 78 TACAAGTTCGACCCGGCCAAGGCCGAGAAGAAGCTGAAGCTGATCCAGCTGCTGCCCCAC 137 Query 740 ACGAAGGGCGAATGGGCCTACAAGCGCCAGCTCGTGACGCTCGAGCCGTGGCAGCTGTTC 799 || |||||||||||||| | |||||| ||||| | || || ||||| |||||| ||| Sbjct 138 ACCAAGGGCGAATGGGCGTTCAAGCGTCAGCTGATCACCCTGGAGCCCTGGCAGGCCTTC 197 Query 800 GGCTTGGCTTGCACGTTCGGCTGGGTTAGGAAGAAGACGGGATTTCGGCGCTTTCGCGAG 859 ||| |||| ||| ||||| ||||| | ||||||||| || || || ||||| |||||| Sbjct 198 GGCATGGCCGTCACCTTCGGGTGGGTCAAGAAGAAGACCGGCTTCCGCCGCTTCCGCGAG 257 Query 860 TCGTACTGGGAGGTGCCGCGCAAGAACGGCAAAAGCGTGATCGCCGCGGGCGTCGGGATT 919 || |||||||||||||||||||||||||| ||||| ||||||| |||||||| || Sbjct 258 AGCTA-TGGGAGGTGCCGCGCAAGAACGGCAAGAGCGTCGTCGCCGCCGGCGTCGGCATC 316 Query 920 GCGATGTTTACCGCCGACGACGAATTCGGCGCCGAGGTGTATTGCGGCGCGACGACCGAG 979 ||||| ||| |||| ||| ||||||| |||||| || ||||||| || |||||| Sbjct 317 AGCATGTTCGTCGCTGACGGCGAGTTCGGCGGCGAGGTCTACAGCGGCGCCACCACCGAG 376 Query 980 CGGCAGGCTTGGGAAGTCTTTCGGCCGGCGCGGCTGATGGTGAAGCGCTCGCCGCTGCTC 1039 |||||| ||||| || || || ||||| ||||||||||||||||||||||| |||| Sbjct 377 AAGCAGGCCTGGGAGGTGTTCCGCCCGGCCAGGCTGATGGTGAAGCGCTCGCCGATGCTG 436 Query 1040 ATCGAACACCTCGGCATTGAGGTTAACGCACAGGCGTTGAATCGGCCCGAAGACGGTAGC 1099 ||||| | || || ||||| ||||| | |||| ||| | || || ||| Sbjct 437 ATCGAGGCCGCGGGGATCGAGGTGAACGCCTCGAACATGAACGTGCCTGCCGAGGGCAGC 496 Query 1100 CGCTTCGAGCCAATCATCGGCAATCCGGGCGATGGCGCGTCGCCGTCCTGCGCGATCGAG 1159 ||||||||||| | |||||||| |||||||| || |||||||| |||||||||| Sbjct 497 CGCTTCGAGCCGCTGATCGGCAACCCGGGCGACGGTGCGTCGCCCAGCTGCGCGATCATC 556 Query 1160 GACGAGTATCACGAGCACGATACGAACGCGCAGTACGAAACCATGCTCACGGGGATGGGC 1219 ||||| | ||||||||||| | || |||||||| ||||||||||| || |||||| Sbjct 557 GACGAATTCCACGAGCACGACAGCTCGGCCCAGTACGACACCATGCTCACCGGCATGGGC 616 Query 1220 G 1220 | Sbjct 617 G 617 >seq58269 Length=416 Score = 286 bits (316), Expect = 1e-72 Identities = 318/419 (76%), Gaps = 4/419 (1%) Strand=Plus/Minus Query 1445 CTGGAGAGCCAGCAGCAACGCGCGATCAAGTCGGCACGGTTCACGAACACGTTCAAGACG 1504 |||||||||| || || || |||||| || || || ||||| ||||| |||||||| Sbjct 416 CTGGAGAGCC-GCTGCC-CGGGCGATCCGCTCTGCGCGCTTCACCAACACCTTCAAGACC 359 Query 1505 AAACACCTGAACGTGTGGACGTCGGCGAAGGCGGGCTATTTCAACCTCGAAGACTGGAAG 1564 || ||||| ||| ||||| | |||||||||||| |||||| |||| |||||||| Sbjct 358 AAGCACCTCAACCTGTGGGTGAGTTCGAAGGCGGGCTTCTTCAACGTCGAGAACTGGAAG 299 Query 1565 GCGTGCGAGGACCGATCGTTGTCGCTCGAGCAGTTCGAGGGACAGGACTGCGTGCTGGCG 1624 || ||||||||| || || | || |||||||||||||| ||||| ||| | |||| Sbjct 298 GCCTGCGAGGACAAGACGCTGACCCTTGAGCAGTTCGAGGGGCAGGAGTGCATTCTGGGC 239 Query 1625 CTGGACATGGCGCGCAAGCTAGACTTGAACAGCATGGCGCGGCTTTTCTGGCGCGATATC 1684 | ||| |||| || ||||| ||| ||||| |||||| ||||| |||||||||| ||| Sbjct 238 TTCGACCTGGCCCGTAAGCTGGACATGAACTCCATGGCCCGGCTGTTCTGGCGCGTCATC 179 Query 1685 GACGGGCGGCGGCATTACTTCTGCGTGGCGCC-TCGATTCTGGGTGCCGGAAGACACCGT 1743 |||||| | || |||| | |||||||||| ||| |||||||| ||||||||||| | Sbjct 178 GACGGGAAGATCCACTACTACAGCGTGGCGCCCTCG-TTCTGGGTTCCGGAAGACACGGC 120 Query 1744 GCGCAATACCGAAAACCGTCGTATGGCCGAGCGCTATCAGGCGTGGGTCAACCACGGCTT 1803 | | | ||| ||||| || ||||||||||||| ||| |||| ||||| |||| Sbjct 119 CTACGACAGCGACAACCGCCGGATGGCCGAGCGCTTCCAGAAGTGGATCAACACCGGCGA 60 Query 1804 CCTGATCGAAACGGATGGCGCGGAGATCGACTATCGCGAGATTCTGGAAGAAGCCAAGG 1862 |||| | || | ||||| ||||||||||| || ||||| || || |||||||||| Sbjct 59 CCTGCAGGTCACCGCCGGCGCCGAGATCGACTACCGAGAGATCCTCGAGGAAGCCAAGG 1 >seq47989 Length=1309 Score = 253 bits (280), Expect = 6e-63 Identities = 292/382 (76%), Gaps = 16/382 (4%) Strand=Plus/Minus Query 1820 GGCGCGGAGATCGACTATCGCGAGATTCTG-GAAGAAGCCAAGGAAGCCAACC-GGCGGT 1877 ||||| ||||||||||| |||||||| || || ||||||||||| ||||||| ||| | Sbjct 1232 GGCGCCGAGATCGACTACCGCGAGATCCTCAGAGGAAGCCAAGGAGGCCAACCAGGCCGC 1173 Query 1878 GCCCGGTTC---AATGCACGCCGCTCGATCCGCATGGTGCGACGAACCTGTCGCACCAGC 1934 |||||| | || || ||| |||| ||||| ||||| ||||||||| ||||||| Sbjct 1172 -CCCGGTGCTGGAAAGC---CCGATCGACCCGCACGGTGCCACGAACCTGAGCCACCAGC 1117 Query 1935 TCGCGGACGAGGGCCTGACGCCGGTCACGATCGTGCAGAACTACACGAACATGTCGGACC 1994 ||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||| |||| Sbjct 1116 TCGATGACGAGGGCCTGACGCCCGTCACCATCGTGCAGAACTACACCAACATGTCCGACC 1057 Query 1995 CGATGAAGGAGCTCGAAGCAGCGATCACGTCACGACGGTTCCATCACGACGGTAATCCGA 2054 ||||||||||| | || || || || || | |||||||||||||| || ||||||| Sbjct 1056 CGATGAAGGAGTTAGAGGCGGCTATTGAATC-GGGCGGTTCCATCACGATGGCAATCCGA 998 Query 2055 TCATGACGTGGTGTATCAGCAACGTGATCGGCAAGAACCTGCCCGGCAACGACGACG-TG 2113 |||||| ||||| ||| | ||||| | || || | | | |||||||| | || | || Sbjct 997 TCATGAGTTGGTGCATCGGTAACGTTGTTGGGAAAACCATTCCCGGCAA--ATGATGTTG 940 Query 2114 GTACGTCCGGTCAAGCA-GGGCAACGACAACAAAATCGACGGCGCCGTGGCGCTCATCAT 2172 || | | | ||| | ||| || ||||| || || ||||| || ||||| ||||| Sbjct 939 TTAAGCCAATTAAAGAACAGGC--TGAAAACAAGATAGATGGCGCAGTCGCGCTGATCAT 882 Query 2173 GGCGGTGGGCCGCGCGATGCTG 2194 | | | || ||||| |||||| Sbjct 881 GACCATCGGGCGCGCCATGCTG 860 >seq74519 Length=720 Score = 219 bits (242), Expect = 1e-52 Identities = 319/443 (72%), Gaps = 6/443 (1%) Strand=Plus/Plus Query 3975 GTGCGAGCCGATGACGAGCTACGAGGGGCTGCGTGCCGCGGTGAATCAGGCAGTGGCCGA 4034 ||||||| | ||||| |||||||| || ||||| ||| | | || |||||||| || Sbjct 260 GTGCGAGACCATGACCAGCTACGAAGGCCTGCGGGCCCAGCTCCGCCAAGCAGTGGCGGA 319 Query 4035 CCCCGCGGTCGAACACATCGTGCTCGATATCGACAGCAATGGCGGCAGCGCCACCGGCGC 4094 ||| ||||| || |||||||| || | |||||| | |||||| |||| |||||| Sbjct 320 TCCCAACGTCGAGCATATCGTGCTGGACGTGGACAGCCA-GGCGGCGCCGCCGTCGGCGC 378 Query 4095 GTTCGAACTGGCCGACGATATCCGGGCCGCGTCGCTGGTCAAGCCAATTACCGCGATCGT 4154 |||||||||||||||||| ||||| || ||| ||| | ||||| || |||| | || Sbjct 379 GTTCGAACTGGCCGACGACATCCGCGCGGCGACGCAGCAGAAGCCCATCACCGGCCTGGT 438 Query 4155 GAACTTCTCGGCGTTCTCGGGCGGCTATCTGATTGCCGCTGCG-GCGTCGCAGGTCATCG 4213 |||||| ||| | | ||||| || ||| | ||| ||| || | |||| | | Sbjct 439 CAACTTCCAGGCCTACAGCGGCGGTTACCTGCTGGCCAGCGCGTGCAGTG-AGGTGGTGG 497 Query 4214 TGAGCCGCACGTCCGGCGTCGGGTCGATTGGCGTCATCGCGAACCATCTGGACGTGTCCA 4273 | |||||||| |||| |||| || |||||||| ||||| | ||| ||||| ||| Sbjct 498 TCAGCCGCACCAGCGGCATCGGCTCCATTGGCGTGATCGCCAGCCACATGGACCGCTCCG 557 Query 4274 AACGTGACGAGCAGCAAGGGATCAAGGTGACGTCGGTGTTTGCCGGGGACCACAAGAACG 4333 | |||| || || ||||||||||| |||| |||||| ||| ||||||||||| Sbjct 558 GCCTGAACGA-AAGGCCGGCATCAAGGTGACCACGGTCTTTGCC-GGGCCCACAAGAACG 615 Query 4334 ATCTCACCCCGCACGAGCCGCTGAGCGATCAGTCGCTGGCGTTCCTCACCAGCATGGTGC 4393 | ||||| ||||||||| ||||| || ||||||||| | || | | ||| || | Sbjct 616 ACCTCACGCCGCACGAGGCGCTGTCTGACCAGTCGCTGAAAGTGCTGAACGACATCGTTC 675 Query 4394 AAAACA-GCTACAAGCAGTTCGT 4415 || | | ||||| | | |||||| Sbjct 676 AAGAGACGCTACGAACTGTTCGT 698 >seq60375 Length=622 Score = 194 bits (214), Expect = 5e-45 Identities = 136/154 (88%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 2039 CACGACGGTAATCCGA-TCATGACGTGGTGTATCAGCAACGTGATCGGCAAGAACCTGCC 2097 |||||||| || |||| ||||||| ||||||||| |||||||| | |||||||||||||| Sbjct 2 CACGACGGCAACCCGAATCATGACCTGGTGTATCGGCAACGTGGTGGGCAAGAACCTGCC 61 Query 2098 CGGCAACGACGACGTGGTACGTCCGGTCAAGCAGGGCAACGACAACAAAATCGACGGCGC 2157 ||||||||||||| | || || ||| ||||||||||| | |||||||| ||||||||||| Sbjct 62 CGGCAACGACGACATCGTGCGACCGATCAAGCAGGGCGATGACAACAAGATCGACGGCGC 121 Query 2158 CGTGGCGCTCATCATGGCGGTGGGCCGCGCGATG 2191 ||||||||| |||||||||||||| || |||||| Sbjct 122 CGTGGCGCTGATCATGGCGGTGGGGCGGGCGATG 155 >seq63426 Length=480 Score = 134 bits (148), Expect = 4e-27 Identities = 131/169 (78%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 819 GCTGGGTTAGGAAGAAGACGGGATTTCGGCGCTTTCGCGAGTCGTACTGGGAGGTGCCGC 878 ||||| | | |||||| || | |||||||| |||||| |||||||||||||||| Sbjct 169 GCTGGCTGCGCAAGAAGGACGGCTACCGGCGCTTCCGCGAGAGCTACTGGGAGGTGCCGC 110 Query 879 GCAAGAACGGCAAAAGCGTGATCGCCGCGGGCGTCGGGATTGCGATGTTTACCGCCGACG 938 ||||||||||||| ||||| ||||||| ||||| || || ||||| ||| |||| Sbjct 109 GCAAGAACGGCAAGAGCGTCGTCGCCGCCGGCGTTGGCATCAGCATGTTCGTCGCTGACG 50 Query 939 ACGAATTCGGCGCCGAGGTGTATTGCGGCGCGACGACCGAGCGGCAGGC 987 ||| ||||||| |||||| || ||||||| || |||||| |||||| Sbjct 49 GCGAGTTCGGCGGCGAGGTCTACAGCGGCGCCACCACCGAGAAGCAGGC 1 >seq52587 Length=1677 Score = 127 bits (140), Expect = 6e-25 Identities = 427/649 (66%), Gaps = 28/649 (4%) Strand=Plus/Plus Query 17487 AATACGCAACTGACTGCGGTGCGCGTGCGCTTCGGTGTGCCGGCGCTACAGCGTCAGGAC 17546 ||||| || || | || |||||| |||| || | |||||| || |||| |||||| Sbjct 1041 AATACTCAGCTCTCCGCCGTGCGCCTGCGTTTTGCCTGGCCGGCCCTGCAGCAGCAGGAC 1100 Query 17547 ACGTCGAACGGCAATATCACGGGCTATCGCGTCGACTATGCGATCGACTTGTCGGTCGAC 17606 | ||| ||||| |||| ||||| || |||| || || | ||| || | |||| Sbjct 1101 AG--CGAG-GGCAACATCAACGGCTACCGGATCGAGTACGCCGTGGACGTGGCCACCGAC 1157 Query 17607 GGCGGGTCGTATGCGCAGGTGCTGGCCGGTGCGTTCGACGGCAAGACGACGTCGCTCTAT 17666 ||||| | || |||||||||| | ||| | ||||||||||| || | | ||| Sbjct 1158 GGCGGTGCCTACCAGCAGGTGCTGCTGGAGGCGGTGGACGGCAAGACCACCACCCGCTAC 1217 Query 17667 GAGCGCTCGCATCGGATCGAGCTGCCGCGCGCAAAAAATGGTTGGTTGATCCGCGTGCGC 17726 |||||||||| |||||||| ||||| || | | || ||| ||||||||| ||| Sbjct 1218 GAGCGCTCGCGCCGGATCGACCTGCCCAAGGCCACCAGCGGCTGGCAGATCCGCGTCCGC 1277 Query 17727 CGCATCACGCCGAACGCGCAC-ACGGCGACGATCGCCGACGCGATCAACATCGAGGCGAT 17785 || ||||| | ||| | || || | | |||||||| | || ||| | | || Sbjct 1278 CGGATCACCGCCAACCAGAACAACAACCGC-ATCGCCGATACCATGTCCATTGCCGGCAT 1336 Query 17786 TACCGAGATCATCGATCGGAAGCTCCGCTATCCGATGACGGCGCTTGTCGGTATGAC--G 17843 ||||| | ||||| ||||| |||||||| | |||||||| || || | | | Sbjct 1337 CACCGAAGTGATCGACGCCAAGCTGCGCTATCCCAACACGGCGCTGCTC--TACGTCGAG 1394 Query 17844 TTCGACGCACGTTCGTTCTCGAGCGTGCCAGTGCGTTCGTATCAC----GTGCGA-GGGA 17898 ||| ||| |||| | | | || |||| || | | |||||| | | Sbjct 1395 TTCAGCGCTGAGCAGTTCAGCAACATCCC--TGCG---GTGACCCTGGAGTGCGACGCGC 1449 Query 17899 TGATCTTCCGAGTCCCGACAAACTACGACCCGGAGACGCGTACGTACTCGGGTACATGGG 17958 | ||| || || || | |||||| |||| || || || ||||| || |||| Sbjct 1450 GCAAGGTCCAGGTGCCCACCACCTACGATCCGGTGAACCGCACCTACTCAGGCGTCTGGG 1509 Query 17959 ACGGTACGTTCAAGGCAGCATGGACGAACAATCCGGCGTGGGTCTACTACGGCCTACTTC 18018 |||| | |||||| | || ||||| ||||| ||||| ||| || || || || || Sbjct 1510 ACGGCAGCTTCAAGTCGGCCTGGACCAACAACCCGGCCTGGATCACCTTCG----ACGTC 1565 Query 18019 TCGAC--AAGCTC-AACGGATTGGGTGACCGTGTCGATGCTTCGATGGTCGATAAGTGGG 18075 | || | | || || |||| | || || | | | ||||||||| |||| | Sbjct 1566 GCTACCAATGATCGCTTGGGCTGGGCAAGCGCATCAAGCCCTGGATGGTCGACAAGTACG 1625 Query 18076 CGCTGTA-CGCAATCGCGCGTTACTGCGACGAACTCGTGTCCGACGGGA 18123 ||| || ||| ||||| | ||||||||| | |||||| | ||||||| Sbjct 1626 AGCTCTATCGC-ATCGCTCAGTACTGCGACCAGCTCGTGCCGGACGGGA 1673 >seq55672 Length=1078 Score = 104 bits (114), Expect = 7e-18 Identities = 239/351 (68%), Gaps = 8/351 (2%) Strand=Plus/Plus Query 722 ATTCAGCTTTTGCCGCATACGAAGGGCGAATGGGCCTACAAGCGCCAGCTCGTGACGCTC 781 |||||| | |||||||| || ||||| |||||||| | || || || | | ||||| Sbjct 727 ATTCAGTTGTTGCCGCACACCAAGGG-GAATGGGCATTTAAACGTATGCCCATCACGCTT 785 Query 782 GAGCCGTGGCAGCTGTTCGGC-TTGGCTTGCACGTTCGGCTGGGTTAGGAAGAAG-ACGG 839 || | ||||| || ||| || ||| || | || || ||||| | || | | || Sbjct 786 GAAGCCTGGCAACTTTTCATTATTTGCTGGCGCATTTGGTTGGGT--GCAAAAGGCACTA 843 Query 840 GATTTCGGCGCTTTCGCGAGTCGTACTGGGAGGTGCCGCGCAAGAACGGCAAAAGCGTGA 899 | | ||||||||||||| ||| ||| | || || || ||||| || | | Sbjct 844 AACTGAGGCGCTTTCGCGAAGTTTACACTGAGATACCTCGGAAAAACGGTAAGTCGGCTA 903 Query 900 TCGCCGCGGGCGTCGGGATTGCGATG-TTTACCGCCGACGACGAATTCGGCGCCGAGGTG 958 || | || ||||| | | || || |||||| || |||||||| || || || Sbjct 904 TCTCAGCTGGCGTTGC-ACTGTTCTGCTTTACCTGTGATTCTGAATTCGGTGCAGAAGTC 962 Query 959 TATTGCGGCGCGACGACCGAGCGGCAGGCTTGGGAAGTCTTTCGGCCGGCGCGGCTGATG 1018 |||| ||| || || || || |||||| |||||||| ||||| ||||||||||||||| Sbjct 963 TATTCCGGTGCAACCACTGAAAAGCAGGCGTGGGAAGTGTTTCGTCCGGCGCGGCTGATG 1022 Query 1019 GTGAAGCGCTCGCCGCTGCTCATCGAACAC-CTCGGCATTGAGGTTAACGC 1068 |||||| | || || | | || | ||||||||||||| ||||| Sbjct 1023 TGTAAGCGCACCCCAATGATGGTTGACGGCTTTCGGCATTGAGGTCAACGC 1073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155394383709600