Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_009237.1 Length=37446 Score E Sequences producing significant alignments: (Bits) Value seq34670 116 9e-22 seq120846 109 1e-19 seq34527 107 5e-19 seq88192 100 7e-17 >seq34670 Length=3136 Score = 116 bits (128), Expect = 9e-22 Identities = 152/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 26674 CGGTTTTCCGGCTTGTGGTCCGGCCGTTGTGCATTGAAGGCCAGCTTCTCGACGATCGCG 26733 |||||||| |||||||||| | |||||| || ||| ||||||||||||| || | ||| Sbjct 1843 CGGTTTTCGCGCTTGTGGTCGGCCCGTTGCGCGTTGTAGGCCAGCTTCTCTACCACCGCA 1784 Query 26734 CCAGCTACGTCGTATTGCTTCGCG---CCGGCGAGATCGAAAATCCGGATCACCGCGTCC 26790 ||| ||||||| ||||| | | || ||| | ||||||||| | ||||| Sbjct 1783 CCACCTACGTC---CAGCTTCAGGAAAGCAGCCGTATCCAGAATCCGGATAATGGCGTCA 1727 Query 26791 GCGAGTTCGACTTCGATCATCGGACGATGGGGAAGCTTGTCGTCCATCAAGCTCTTTCGA 26850 || ||||| || ||||||||| | || | || || | ||||||||||| | |||| || Sbjct 1726 GCCAGTTCTACCTCGATCATCTGGCGGTTCGGCAGGTGGTCGTCCATCAGGTTCTTACGC 1667 Query 26851 TGGCCCTCCATCGCCTCGGCGACTTCGGA 26879 ||||||| ||| || | | |||||| Sbjct 1666 ATACCCTCCAGCGCTTCCGATAGTTCGGA 1638 >seq120846 Length=363 Score = 109 bits (120), Expect = 1e-19 Identities = 252/368 (68%), Gaps = 24/368 (7%) Strand=Plus/Minus Query 1444 CCGCTGCTCGCGGCGCTTCCGGC-CGACGCTCGC--TCGTACAACGGCGAGGACTTCGGC 1500 |||||||| | |||||| ||| | | | || || |||| | | ||| |||||||| | Sbjct 357 CCGCTGCTGGAGGCGCTGCCGACACAAAGCGTGCAGTCGTTCTATGGCATGGACTTCGCC 298 Query 1501 CGCACGGGCGACCTGACGGTCCACGTGCCGCTGATCGAACAACAGAACCTGATCC--GCC 1558 || | |||||||| ||||| | ||||||||| || ||| | | | ||| Sbjct 297 CGATCAGGCGACCTCTCGGTCATCTGGCCGCTGATAAAAACGCAGGATTTACGCAAGGCC 238 Query 1559 GTGTGCCGTTCATCGTCGAGCTGCGCAACGTGCCTTTCCGGCAGCAGGAACAAATCGCTT 1618 | | || || | |||||||||||||||||| || || | ||||| || || ||| | Sbjct 237 GCG--CCCTTTACCGTCGAGCTGCGCAACGTACCCTTAAG-CAGCAAGAGCAGATCCTCT 181 Query 1619 TCTACCTGCTCGACCGGCTCCCGCGCT------TCACGGGCGGTGCCTTCGATGCGCGCG 1672 |||||||| | |||| || || | ||| ||||| || |||||| || | Sbjct 180 TCTACCTGGTG---CGGCGCCTGCCCAATTTCCTCAAGGGCG---CCCACGATGCCCGAG 127 Query 1673 GCAACGGCCAGTACCTCGCCGAGATCGCCATGCAG-CGC-TACGGCGCGTCGCGCATCCA 1730 | ||||||||| | ||||||| | ||| ||| | || | ||| |||||| | Sbjct 126 GTAACGGCCAGCAGATCGCCGAAA-CGCGCTGCCGTCGAATTTGGCTATAACCGCATCGA 68 Query 1731 GCAAGTGATGCTGTCGGAGTCGTGGTATCGCGAGCACATGCCGCCCGTGAAGGCAGCATT 1790 |||||| |||||| | ||| | ||||||||||| ||||||| || | ||||| || | Sbjct 67 GCAAGTCATGCTGACCGAGGC-TGGTATCGCGACAACATGCCCCCGTTCAAGGCCGCGCT 9 Query 1791 CGAAGACG 1798 ||||||| Sbjct 8 GGAAGACG 1 >seq34527 Length=8391 Score = 107 bits (118), Expect = 5e-19 Identities = 150/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 26674 CGGTTTTCCGGCTTGTGGTCCGGCCGTTGTGCATTGAAGGCCAGCTTCTCGACGATCGCG 26733 |||||||| |||||||||| | ||||| || ||| ||||||||||||| || | ||| Sbjct 6887 CGGTTTTCGCGCTTGTGGTCAGATCGTTGCGCGTTGTAGGCCAGCTTCTCTACCACCGCA 6828 Query 26734 CCAGCTACGTCGTATTGCTTCGCG---CCGGCGAGATCGAAAATCCGGATCACCGCGTCC 26790 ||| ||||||| ||||| | | || ||| | ||| ||||| | |||||| Sbjct 6827 CCACCTACGTC---CAGCTTCAGGAAAGCAGCCGTATCCAGAATGCGGATAATCGCGTCA 6771 Query 26791 GCGAGTTCGACTTCGATCATCGGACGATGGGGAAGCTTGTCGTCCATCAAGCTCTTTCGA 26850 || ||||| || ||||||||| | || | || || | ||| ||||||| | |||| || Sbjct 6770 GCCAGTTCTACCTCGATCATCTGGCGCTTCGGCAGGTGGTCATCCATCAGGTTCTTACGC 6711 Query 26851 TGGCCCTCCATCGCCTCGGCGACTTCGGA 26879 ||||||| ||| || | | |||||| Sbjct 6710 ATACCCTCCAGCGCTTCCGATAGTTCGGA 6682 >seq88192 Length=597 Score = 100 bits (110), Expect = 7e-17 Identities = 186/269 (69%), Gaps = 8/269 (3%) Strand=Plus/Minus Query 928 AACCTGCGCGGCAAGCAAGGTCGCGTGATCATCGACGAAGCTGCGTTCCACGAGCAGCTC 987 |||||||| ||| || || ||| | |||||||| || || ||||| | | || Sbjct 464 AACCTGCGGGGCCGTCAGGGCATCGTCGTAATCGACGAGGCGGCCTTCCATGCAGACCTG 405 Query 988 GGCGAGCTGCTGAAAGCTGCAATGGCCCTGCTGATGTGGGGCGGTCAGGTCCACATCATT 1047 | |||||||||||| || || |||| || |||| ||||| || ||||||| |||| Sbjct 404 GCCGAGCTGCTGAAGGCGGCCTTGGCGCTCTTGATCTGGGGTGGCGAGGTCCATGTCATC 345 Query 1048 TCGACGCACGACGGCGTCGACAACGCGTTCAACGAGCTGGTCACGGACGTCCGTTCCGGC 1107 || ||||||||| ||| ||||| ||||| |||||| || || |||| | ||| Sbjct 344 AGCACCCACGACGGCACCGAGAACGCCTTCAATGAGCTGATCGAAGAGATCCGCGCGGGC 285 Query 1108 AAGAAGCCCTACAGCCTGCAT---CGCATCACGTTCGCCGACGCGGTTCAGGACGGGCTC 1164 |||| | | || || | ||| ||| ||| ||| ||||| ||||| ||| Sbjct 284 ---AAGCGCAAGGGCGTGGTTTTCCGCTGCACCTTCCGCGAAGCGGTAGCCGACGGTCTC 228 Query 1165 T-ACCAGCGAATTTG-CTTGCGCAAGGGC 1191 | | ||||| | || ||||||||||||| Sbjct 227 TAATCAGCGCGTGTGCCTTGCGCAAGGGC 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119520378028800