Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_009542.2 Length=33985 Score E Sequences producing significant alignments: (Bits) Value seq20954 185 2e-42 seq60962 141 2e-29 seq98197 105 1e-18 seq59289 105 1e-18 seq44536 100 6e-17 seq68574 95.1 3e-15 seq97590 93.3 9e-15 seq51636 91.5 3e-14 seq37564 91.5 3e-14 seq68575 89.7 1e-13 seq66453 89.7 1e-13 seq50247 87.8 4e-13 seq48196 84.2 5e-12 seq37566 84.2 5e-12 >seq20954 Length=3811 Score = 185 bits (204), Expect = 2e-42 Identities = 575/872 (66%), Gaps = 41/872 (5%) Strand=Plus/Minus Query 13471 TCCAGCACTCGGAAGCGCTCGCCGGCAACCGTGGGCGGGGCGACCACCACCAGGGTGGCA 13530 || ||||| ||||| |||| | |||| ||||| ||||||||||||||| ||| Sbjct 2890 TCGAGCACGCGGAACTTGCCGCCCGGTACCGCCGGCGGCGCGACCACCACCAGGCCGGCG 2831 Query 13531 TTGTCGCGGGTG-CGGCTCGGGTCATAACCCATCCACACCTCGCGC-CGCCCGAACGGGT 13588 |||||| ||| |||| |||||||| || | ||| ||| ||| ||||| | ||| Sbjct 2830 GTGTCGCCGGTCTCGGCG-GGGTCATAGCCGACCCAAACCGAGCGATCGCCCAGA--GGT 2774 Query 13589 CAGGACGCCCG-GGCTTGTAGTCCTC---CCA-TCGGGTGGG--GTCCACC---CCTGCC 13638 | | || || ||||||||||| ||| ||| | ||||||| | | | Sbjct 2773 CGAGCTGCAAACGGTTTGTAGTCCTCGGCCCACTCGACCCAGCTGTCCACCATGCAGGGC 2714 Query 13639 CGCTCCATGTCCTGGAACTTGAACACAGACAGGGCATCGTCGATAAAGCGGCACATGTAG 13698 || |||| || || ||| | | | | ||||||| || ||||||| Sbjct 2713 TGCAGCATGGCCAGGGG---GAAGATGCTCGCGCCGTCGTCGACGAACTGGCACATCAGC 2657 Query 13699 AGGCGGTCGAACACCTCCTCCGGGTACTCGTCCTTGAGCTCCTCGATGTCGATGAGGTGG 13758 ||| | ||| |||| ||| ||| ||| |||||||||||||| ||||| ||||| | Sbjct 2656 AGGTTCTGGAAGGCCTCGGCCGAGTATTCGAGCTTGAGCTCCTCGAGGTCGAAGAGGTCG 2597 Query 13759 CAACCGAGGCGAAT-GGCGTCCTCGATGGTGATGACGTAGCGCCACTGCCTGTCAGGGCA 13817 || ||| || || | ||||||| |||||||| || | ||||| || ||| ||| Sbjct 2596 CAGCCGCGG-GACTCGGCGTCCAGGATGGTGACGATCTGCCGCCAGATCCGGTCCTCGCA 2538 Query 13818 GATGCGGCC---------GCCGTCGCGTAGGTCATCTTCACCAGGGAAGTCGATGGCCAC 13868 || ||||| | ||||| | | |||| || | | || | ||| | Sbjct 2537 GAGCCGGCCCTGCTGCAAGGCGTCGTGGGAGACATC--CAGCTTG--AGGTGCTGGGCGA 2482 Query 13869 CCGGCTCGGCCGCTGTCCCTTCCAGCGATCCCCGGTCCAGAACCGGTACGCCTCGTGCAC 13928 |||||| | || ||| | |||| || ||||||||||| ||| |||||||| | Sbjct 2481 CCGGCTTGCCCT-TGT----TGAAGCGCTCGCCGGTCCAGAAGGTGTAGGCCTCGTGGGC 2427 Query 13929 CTTGCTCGACGGGGTCGAGAAGTAGGTCTTGCGCCAGTGGCTCTGGGTCGCCATGGCACT 13988 | || ||| |||||||||||||| ||| | || |||| | |||||| | || Sbjct 2426 CATGGAGCTCGGCGTCGAGAAGTAGGTGCGGCGGTACTGCTTCTGCATGGCCATGCCGCT 2367 Query 13989 GGCCACATCAGACAGCTTCTCGAAGTTGGGGATCCAGAAGTATTCGTCGATGTAGACGTT 14048 |||||| | ||||| ||||||| | | |||||||| ||||||||| ||||| ||| Sbjct 2366 GGCCACCTTGTTCAGCTCCTCGAAGCGGAAGGTCCAGAAGAATTCGTCGAAGTAGAAGTT 2307 Query 14049 GCCGGAGCGGGACTGGGCACTGTTGGAGTTGGTGGAGCAGAAGTGCAGCTCGGCCCCGTT 14108 |||| | | |||||| || || ||||| ||||||||||||||| ||||| Sbjct 2306 GCCGTGGTAGCCCTGGGCGGTGCGGGCATTGGTACCTAGGAAGTGCAGCTCGGCGCCGTT 2247 Query 14109 CGACAGCACGATGGGGTTGCCGGTCAGGGTGACGCCGAGGAAGGTCTGGGCGATCTTGC- 14167 | ||| | ||| || | ||||||| ||||||| || | |||||| || Sbjct 2246 GGCCAGGATGATCGGATCCCCGGTCACCTCGACGCCGCAGACTTCCCGGGCGA--AGGCT 2189 Query 14168 AGATATAGGAGCGGAACACCTCCGCCTGGGCGCGGGTGGCGGACAGGAAAATCTGGTTGC 14227 ||| || | ||| | | |||||| | |||| || ||||| |||||||||| Sbjct 2188 GGATGTACGCCTTGAAGATATGCGCCTGATTCTTGCTGGCCGAGAGGAAGATCTGGTTGC 2129 Query 14228 CACCCGTCAGAATGGCATCCTCCAACGCCTCGCCGGCGAAATAGTAAGTCATCCCGATCT 14287 || || | ||| ||| || ||||||| |||||| ||| | || ||||||| Sbjct 2128 GCCCGGTGGTCAGGGCGTCCAGGAATGCCTCGCGGGCGAAGTAGAAGGTGGCGCCGATCT 2069 Query 14288 GACGGGACTTGAGAATGTTACGGGTGCGCGGC 14319 | ||| |||||| ||| ||||| ||| || Sbjct 2068 GCCGGCTCTTGAGGATGGCGCGGGTCCGCTGC 2037 >seq60962 Length=2270 Score = 141 bits (156), Expect = 2e-29 Identities = 135/173 (78%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 676 ACCGCATCTTCCAGGTGGTCGGGGGCGAAGTGGGCATAGCGCATCGTCATCTTGATGTCG 735 || ||||| || | || ||||| || || || || || ||||| ||||| || |||||| Sbjct 2113 ACAGCATCCTCTAAATGTTCGGGCGCAAAATGCGCGTAACGCATTGTCATTTTAATGTCG 2054 Query 736 GTGTGGCCGAGGATGCGCTGTAGCACCAGGATGTTGCCGCCGTTCATCATGAAGTGACTG 795 |||||||| || | |||||| | || | || || |||||||||||||| |||||||| Sbjct 2053 GTGTGGCCAAGCACGCGCTGCAAAACTAAAATATTTCCGCCGTTCATCATAAAGTGACTT 1994 Query 796 GCGAAGGTATGGCGCAGAACGTGGGTGCTCTGGCCTGCGGGCAACTTAATGCC 848 || ||||||||||||| |||||| || ||||||||| ||||| | ||| || Sbjct 1993 GCAAAGGTATGGCGCAAAACGTGAGTTAACTGGCCTGCTGGCAATTCAATTCC 1941 >seq98197 Length=1065 Score = 105 bits (116), Expect = 1e-18 Identities = 140/189 (74%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 649 TTTAGCGCGGTGATCGGGTTGAGACGCACCGCATCTTCCAGGTGGTCGGGGGCGAAGTGG 708 ||||||| | | ||| |||| || |||||||| | |||||| || || | | ||| Sbjct 263 TTTAGCGTTCTCAGCGGATTGAACCGTACCGCATCCTGCAGGTGATCCGGCGACAGGTGC 204 Query 709 GCATAGCGCATCGTCATCTTGATGTCGGTGTGGCCGAGGATGCGCTGTAGCACCAGGATG 768 |||||||||||||||||| | || || || || ||||| ||| ||| |||||| Sbjct 203 GCATAGCGCATCGTCATCGTCATCGACGTATGCCCCAGGATCTTCTGCAGCGTCAGGATA 144 Query 769 TTGCCGCCGTTCATCATGAAGTGACTGGCGAAGGTATGGCGCAGAACGTGGG-TGCTCTG 827 || ||||| ||||||||| |||| |||||||| ||||||| ||| |||| ||| || Sbjct 143 TTCCCGCCATTCATCATG-AGTGCGACGCGAAGGTGTGGCGCA-AACATGGGACGCT-TG 87 Query 828 GCCTGCGGG 836 || ||||| Sbjct 86 TCCGGCGGG 78 >seq59289 Length=655 Score = 105 bits (116), Expect = 1e-18 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 649 TTTAGCGCGGTGATCGGGTTGAGACGCACCGCATCTTCCAGGTGGTCGGGGGCGAAGTGG 708 ||||||| | | ||| |||| || |||||||| | |||||| || || | | ||| Sbjct 379 TTTAGCGTTCTCAGCGGATTGAACCGTACCGCATCCTGCAGGTGATCCGGCGACAGGTGC 320 Query 709 GCATAGCGCATCGTCATCTTGATGTCG--GTGTGGCCGAGGATGCGCTGTAGCACCAGGA 766 ||||||||||| ||||| || || || || || ||||| || ||| ||||| Sbjct 319 GCATAGCGCATGGTCAT--TGCCAGCGACGTATGCCCCAGGATTTTTTGCAGCGTCAGGA 262 Query 767 TGTTGCCGCCGTTCATCATGAAGTGACTGGCGAAGGTATGGCGCAGAACGTGGGTGCTCT 826 |||| ||||| ||| | |||||||||||||||||| || || || ||||| ||| || Sbjct 261 TGTTCCCGCCCCGCATAACGAAGTGACTGGCGAAGGTGTGCCGGAGTACGTGCGTGGCCT 202 Query 827 GGCCTGCGGGCAACTTAAT 845 |||| || || | ||| || Sbjct 201 GGCCGGCCGGGAGCTTGAT 183 >seq44536 Length=546 Score = 100 bits (110), Expect = 6e-17 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 676 ACCGCATCTTCCAGGTGGTCGGGGGCGAAGTGGGCATAGCGCATCGTCATCTTGATGTCG 735 ||||||||||| | || || ||||| || |||||||| ||| ||||| || || ||| Sbjct 297 ACCGCATCTTCTAAATGATCAGGGGCAAAATGGGCATATATCATTGTCATTTTTATATCG 238 Query 736 GTGTGGCCGAGGATG-CGCTGTAGCACCAGGATGTTGCCGCCGTTCATCATGAAGTGACT 794 ||| ||||| ||| ||| | | |||| ||||| || || ||||||||||| || || Sbjct 237 ACGTGACCGAGAATGTCGC-GCAAAACCAAAATGTTTCCACCATTCATCATGAAATGGCT 179 Query 795 GGCGAAGGTATGGCGCAGAACGTGGGT 821 ||| || ||||| | ||||||||| || Sbjct 178 GGCAAATGTATGTCTCAGAACGTGAGT 152 >seq68574 Length=829 Score = 95.1 bits (104), Expect = 3e-15 Identities = 120/164 (73%), Gaps = 6/164 (4%) Strand=Plus/Minus Query 675 CACCGCATCTTCCAGGTGGTCGGGGGCGAAGTGGGCATAGCGCATCGTCATCTTGATGTC 734 ||||||||| | ||| || || || | | || || |||||||| ||||| || | Sbjct 602 CACCGCATCCTGCAGATGATCCGGCACTAGATGCGCGTAGCGCATAGTCAT-----TGCC 548 Query 735 GGTGTGGCCGAGGATGCGCTGTAGCACCAGGATGTTGCCGCCGTTCATCATGAAGTGACT 794 ||| || | ||||| ||| || |||||||||||||| ||||| |||||||| || Sbjct 547 AGTGAGGTC-AGGATTTTCTGCAGGGTGAGGATGTTGCCGCCATTCATGATGAAGTGGCT 489 Query 795 GGCGAAGGTATGGCGCAGAACGTGGGTGCTCTGGCCTGCGGGCA 838 ||| ||||| |||||||| ||||| | | |||||| | |||| Sbjct 488 GGCAAAGGTGTGGCGCAGGACGTGTGAGGACTGGCCGGGAGGCA 445 >seq97590 Length=664 Score = 93.3 bits (102), Expect = 9e-15 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 687 CAGGTGGTCGGGGGCGAAGTGGGCATAGCGCATCGTCATCTTGA-TGTCGGTGTGGCCGA 745 ||| || || || || | || ||||||||||| ||||| | || || ||| ||| | Sbjct 326 CAGATGATCAGGCGCCAGATGTGCATAGCGCATGGTCATTGCCAGTGACG-TGTTGCCCA 268 Query 746 GGATGCGCTGTAGCACCAGGATGTTGCCGCCGTTCATCATGAAGTGACTGGCGAAGGTAT 805 |||| ||| || |||||||||||||| ||||| |||||||| ||||| ||||| | Sbjct 267 GGATTTTCTGCAGGGTGAGGATGTTGCCGCCATTCATGATGAAGTGGCTGGCAAAGGTGT 208 Query 806 GGCGCAGAACGTGGGTGCTCTGGCCTGCGGGCA 838 ||||||| ||||| | | |||||| | |||| Sbjct 207 GGCGCAGGACGTGTGAGGACTGGCCGGGAGGCA 175 >seq51636 Length=535 Score = 91.5 bits (100), Expect = 3e-14 Identities = 102/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 11636 GGGGTCGGTCGCGTAGAAGATGAACCCCATGTGGGCGCCGTTGAGGAAGTAGCGGCGTCG 11695 || ||||||| |||||||||||| || |||| ||||||| | |||| ||| || Sbjct 370 GGCGTCGGTCATGTAGAAGATGAAACCGGCGTGGCTGCCGTTGTTGTAGTACTTGCGGCG 429 Query 11696 GAACAGGGTGGCGTCCTGGTTGAGCAGCGCAGACTGCAGGCCGCCAAGGTAATCGGGCAT 11755 || ||| ||||| || ||| |||||||| ||||||| | || |||| | |||||||| Sbjct 430 GA-CAGCGTGGCCGACTCGTTCAGCAGCGCCGACTGCATGGCGGCAAGCCACTCGGGCAT 488 Query 11756 GCCATAGACCTGCTG 11770 ||| |||| || ||| Sbjct 489 GCCGTAGATCTCCTG 503 >seq37564 Length=1551 Score = 91.5 bits (100), Expect = 3e-14 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 688 AGGTGGTCGGGGGCGAAGTGGGCATAGCGCATCGTCATCTTGATGTCGGTGTGGCCGAGG 747 || ||||| || || ||||| ||||| |||||||| | ||| || || || || || | Sbjct 1445 AGATGGTCTGGCGCAAAGTGTGCATAACGCATCGTAACCTTAATATCTGTATGCCCCAAT 1504 Query 748 ATGCGCTGTAGCACCAGGATGTTGCCGCCGTTCATCATGAAGTGA 792 || ||||| ||||| ||||| ||||| |||||||||||||| ||| Sbjct 1505 ATTCGCTGAAGCACTAGGATATTGCCTCCGTTCATCATGAAATGA 1549 >seq68575 Length=1092 Score = 89.7 bits (98), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 675 CACCGCATCTTCCAGGTGGTCGGGGGCGAAGTGGGCATAGCGCATCGTCATCTTGATGTC 734 ||||||||| | ||| || || || | | || || |||||||| ||||| || | Sbjct 182 CACCGCATCCTGCAGATGATCCGGCACTAGATGCGCGTAGCGCATAGTCAT-----TGCC 128 Query 735 GGTGTGGCCGAGGATGCGCTGTAGCACCAGGATGTTGCCGCCGTTCATCATGAAGTGACT 794 ||| || | ||||| ||| || |||||||||||||||||||| |||||||| || Sbjct 127 AGTGAGGTC-AGGATTTTCTGCAGGGTGAGGATGTTGCCGCCGTTCATGATGAAGTGGCT 69 Query 795 GGCGAAGGTATGGCGCAGAACGTG 818 ||| |||| |||||||| ||||| Sbjct 68 GGCAAAGGCGTGGCGCAGGACGTG 45 >seq66453 Length=917 Score = 89.7 bits (98), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 691 TGGTCGGGGGCGAAGTGGGCATAGCGCATCGTCATCTTGATGTCGGTGTGGCCGAGGATG 750 || ||||| || | ||| ||||| ||||| ||||| | | || |||||| ||||| Sbjct 658 TGCTCGGGTGCAAGGTGAGCATAACGCATGGTCATGGCCAAGCTGGAGTGGCCCAGGATT 599 Query 751 CGCTGTAGCACCAGGATGTTGCCGCCGTTCATCATGAAGTGACTGGCGAAGGTATGGCGC 810 ||||||| |||||||| ||||| ||| ||||||||| ||||||||||| || | | Sbjct 598 T-CTGTAGCGTGAGGATGTTCCCGCCCTTCTGCATGAAGTGGCTGGCGAAGGTGTGTCAC 540 Query 811 AGAACGTGGGTGCTCTGGCCT 831 | | | |||| | ||||||| Sbjct 539 ATAGCATGGGCGGCCTGGCCT 519 >seq50247 Length=1652 Score = 87.8 bits (96), Expect = 4e-13 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 11640 TCGGTCGCGTAGAAGATGAACCCCATGTGGGCGCCGTTGAGGAAGTAGCGGCGTCGGAAC 11699 |||||| ||| |||||||| || ||| ||||||| | |||| ||| |||||| Sbjct 269 TCGGTCATGTAAAAGATGAAGCCGGCGTGACTGCCGTTGTTGTAGTACTTGCGGCGGAAC 210 Query 11700 AGGGTGGCGTCCTGGTTGAGCAGCGCAGACTGCAGGCCGCCAAGGTAATCGGGCATGCCA 11759 || ||||| || |||||||||||| ||||||| | || | || | ||||||||||| Sbjct 209 AGCGTGGCCGACTCGTTGAGCAGCGCCGACTGCATGGCGGCGAGCCACTCGGGCATGCCG 150 Query 11760 TAGACCTGCTG 11770 |||| || ||| Sbjct 149 TAGATCTCCTG 139 >seq48196 Length=499 Score = 84.2 bits (92), Expect = 5e-12 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 700 GCGAAGTGGGCATAGCGCATCGTCATCTTGATGTCGGTGTGGCCGAGGATGCGCTGTAGC 759 || ||||| ||||| |||||||| | ||| || || ||||| || | || | ||| || Sbjct 2 GCAAAGTGCGCATACCGCATCGTAACCTTAATATCCGTGTGTCCTAATATCCTCTGAAGT 61 Query 760 ACCAGGATGTTGCCGCCGTTCATCATGAAGTGACTGGCGAAGGTATGGCGCAGAACGTGG 819 || || || || ||||||||||||||||| ||| || || || || || | ||||| Sbjct 62 ACTAGAATATTACCGCCGTTCATCATGAAATGAGAAGCAAATGTGTGACGTAAGACGTGC 121 Query 820 GTGCTCTGGCCTGCGGGCAACTTAATGCCAGCCCGT 855 || ||| ||||| || || ||| || || ||| Sbjct 122 GTCAGCTGTCCTGCAGGTGTCTCAATACCTGCACGT 157 >seq37566 Length=687 Score = 84.2 bits (92), Expect = 5e-12 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 716 GCATCGTCATCTTGATGTCGGTGTGGCCGAGGATGCGCTGTAGCACCAGGATGTTGCCGC 775 ||||||||| ||| || || || || || | || ||||| ||||| |||||||| || | Sbjct 1 GCATCGTCACCTTAATATCCGTATGCCCTAAAATTCGCTGAAGCACAAGGATGTTTCCTC 60 Query 776 CGTTCATCATGAAGTGACTGGCGAAGGTATGGCGCAGAACGTGGGTGCTCTGGCCTGCGG 835 |||| |||||||||||| || |||||||| || | ||||| || ||| || || | Sbjct 61 CGTTTATCATGAAGTGAGAAGCAAAGGTATGACGTAATACGTGCGTAAGCTGCCCGGCAG 120 Query 836 GCAACTTAATGCCAGCCCG 854 | || ||||| || || Sbjct 121 GTGTCTCGATGCCGGCGCG 139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108462314824200