Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq89176 571 2e-158 seq86773 154 4e-33 seq76707 84.2 6e-12 >seq89176 Length=587 Score = 571 bits (632), Expect = 2e-158 Identities = 479/585 (82%), Gaps = 2/585 (0%) Strand=Plus/Plus Query 42536 GAGGCGAGGATCGACGCGCCGCCGATCCCGTCACCCCCCGTGCGCGCCGCGAAGAGGACG 42595 || ||||||||||| || |||||||| ||||| || |||||||| || ||||||| ||| Sbjct 3 GACGCGAGGATCGAGGCACCGCCGATGCCGTCGCCACCCGTGCGGGCACCGAAGAGCACG 62 Query 42596 ACCTTGTTGCCTAGGCCCGTCGCGTTGGCGAGCTTGAGGTCCTCGTGCCGGAGCACGCCC 42655 ||||||||||| ||||| ||||| || || | ||||||||||||||| ||||| || Sbjct 63 ACCTTGTTGCCCGCGCCCGAGGCGTTCGCCAGGTGGAGGTCCTCGTGCCGCAGCACACCG 122 Query 42656 ACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGTCTCGCCG 42715 ||||| ||||||||||| ||||| ||| |||| || || | ||||| |||||||||| Sbjct 123 ACCGCGAGGGCGTTGACGAGCGGGTTGCCCTGGTACACCGGGTCGAAGTAGGTCTCGCCG 182 Query 42716 CCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGACGCCGTGC 42775 |||| ||||||||| |||||||||||||||||||||||||||||||| ||||||| || Sbjct 183 CCGAGGTTCGGCAGTCCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTCACGACGCCGGGC 242 Query 42776 ACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCATGACCGCG 42835 ||||| || ||||||||||||| |||| |||||||||||||| ||||||||||| || Sbjct 243 ACGACGCGGGCCGTGTCGGGGTGGTCGATGGCGCCGAAGCGCAGCGCGTCCATGACGGCC 302 Query 42836 ACCGGGCGAGCG-CCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGTCGCCGC 42894 || || || ||| ||||| |||||||||||||| ||||||||||| || || || ||||| Sbjct 303 ACGGGACGCGCGCCCCATCGAGATGATGTCGCGCACGATGCCGCCGACGCCGGTGGCCGC 362 Query 42895 GCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGTGACCGC 42954 ||||||| |||||| | | | |||||||||||| ||||| ||||||| |||||||| Sbjct 363 GCCCTGGTGGGGCTCCACGTAGCTGGGGTGGTTGTGGCTCTCGACCTTGAAGGTGACCGC 422 Query 42955 CCATCCCTCGCCGACGTCGATGACGCCCGCGTTCTGCCCCATCCCGACCATGAGGCGCTC 43014 ||| || |||||||||||| |||||||||||||| || || ||||||| ||| ||| Sbjct 423 CCAGCCGCCGCCGACGTCGACGACGCCCGCGTTCTCTCCGATGCCGACCAGGAGCTTCTC 482 Query 43015 GCGCATCTCGTCCGAGACCTTCTGCCCGAACCTCTTGAGGTAGAGCTTGCTCGACTTGTA 43074 |||||||||||| | | ||| |||||| | |||| |||| |||||||| Sbjct 483 GCGCATCTCGTCGGTGGTCTTGGTGCCGAACTGGCTCAGGTGCGTCTTGGAGGACTTGTA 542 Query 43075 GGAGCAGTGCTCCG-ACCACATCACCGAGTACATCGCCAGCTCGC 43118 |||||||||||| | ||||||||||||||||||||||||||||| Sbjct 543 GGAGCAGTGCTCTGCTCCACATCACCGAGTACATCGCCAGCTCGC 587 >seq86773 Length=459 Score = 154 bits (170), Expect = 4e-33 Identities = 161/209 (77%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 44065 TCGTCGGCATGAGCTATTCCTGGTGGGACTCGAAGCACACGCGGCACCATGG-CAACCCG 44123 ||||||| |||||| |||||||||| ||| ||||||||||| ||||| || |||||| Sbjct 227 TCGTCGGTATGAGCCGCTCCTGGTGGGCCTCCAAGCACACGCGCCACCACGGCCAACCCC 286 Query 44124 AATCGTGTCGGCAAGGATCCTGATATCGAGGTTGATACGATCTCGTTCCTCGACGAGGAC 44183 || || || ||||| || || || |||||| | || || |||||||||||||||| || Sbjct 287 AACCGCGTGGGCAAAGACCCCGACATCGAGATCGACACCATCTCGTTCCTCGACGTCGAT 346 Query 44184 GCCTCCCGATCGCGTGGCGTCGTCCGATTGATCACGAGGAAGCAGGGATGGCTGTTCTTC 44243 ||| || | | || ||| || || | |||||| | ||||||| ||||||||| Sbjct 347 GCCGCCAG-GCCCGCGGCATCCAGCGCTGGATCACCCAGCGCCAGGGATACCTGTTCTTC 405 Query 44244 CCCCTCCTGACGCTAGAGGGCATCAATCT 44272 || || |||||||| ||||||||||| || Sbjct 406 CCGCTGCTGACGCTTGAGGGCATCAACCT 434 >seq76707 Length=455 Score = 84.2 bits (92), Expect = 6e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11005 GATGGCAGGGGAGACCGTGATCACGGTCGTGGGGAACCTCACTGCAGACCCTGAGCTGCG 11064 |||||| || || ||||| ||||| |||||||| |||||||| || ||||| || ||||| Sbjct 382 GATGGCCGGCGAAACCGTCATCACCGTCGTGGGCAACCTCACGGCTGACCCCGAACTGCG 441 Query 11065 TTACACGCAGAACG 11078 ||||||||||||| Sbjct 442 CTACACGCAGAACG 455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148017016492200